CB290330

Overview
NameCB290330
Unique NameCB290330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290330_ssr73 microsatellite CB290330_ssr73:73..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:283..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 7.597e-54
Identity = 103/158 (65.19%), Postives = 124/158 (78.48%), Query Frame = -3
Query:  166 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 639
            MSL+PS FGGRRTNVFDPFSLDVWDPF+GFL+  LTNAP  A++ + F NA++DW+ETP+AHVFKAD+PGL+         +G ILQISGERS E EEK+D WH VERSSGKF+RRFRLP+NAKVE+VKASMENGVL+VT           K+++I G
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.871e-52
Identity = 106/159 (66.67%), Postives = 123/159 (77.36%), Query Frame = -3
Query:  166 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLS-FALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 639
            MSLIPSIFGGRRTNVFDPFSLDV+DPF+GFL+   L NAP  A + + F NA++DW+ETP+AHVFKADLPGLR         +G ILQISGERS E EEKNDKWH VERSSGKF RRFRLP+NAK+E++KASMENGVL+VT           K+I+I G
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.213e-51
Identity = 104/160 (65.00%), Postives = 122/160 (76.25%), Query Frame = -3
Query:  166 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFL--SFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 639
            MSLIPSIFGGRR+NVFDPFS D+WDPF+GF   S AL NA   AR+ + F NAR+DWKETP+AHVFKADLPGL+         +  +LQISGERSKE EEKNDKWH VER+SGKF+RRFRLP+NAK+E+VKA+MENGVLTV            K+I+I G
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANAS-TARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.529e-51
Identity = 102/158 (64.56%), Postives = 119/158 (75.32%), Query Frame = -3
Query:  166 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 639
            MS+IPS FGGRR+NVFDPFSLDVWDPF  F     ++A    +ET+ F N  IDWKETPQAHVFKADLPGL+         EG++LQISGER+KE+EEKNDKWH VERSSGKFLRRFRLP+NAKV++VKA+M NGV+TVT           KAI+I G
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDF-PLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.692e-50
Identity = 100/161 (62.11%), Postives = 118/161 (73.29%), Query Frame = -3
Query:  166 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFL---SFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 639
            MSLIP+ FGGRR NVFDPFSLDVWDPF  F    + +  + P  +RE S F + R+DWKETP+AHVFKAD+PGL+         + ++LQISGER+ E+E+KND WH VERSSGKF+RRFRLP+NAKVEQVKASMENGVLTVT           KAIEI G
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.529e-49
Identity = 102/158 (64.56%), Postives = 117/158 (74.05%), Query Frame = -3
Query:  166 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 639
            MSLIPSIFGGRR+NVFDPFSLDVWDPF  F  F  +    L+ E S F N R+DWKETP+AHVF+AD+PGL+         + R+LQISGER+ E+E+KND WH VERSSG F+RRFRLP+NAKVEQVKASMENGVLTVT           KAIEI G
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDF-HFPTS----LSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.141e-48
Identity = 96/158 (60.76%), Postives = 115/158 (72.78%), Query Frame = -3
Query:  166 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 639
            MSLIPS FGGRR+NVFDPFSLDVWDPF  F       +    RE S F + R+DWKETP+AHVFKADLPG++         + R+LQISGERS E+E+KND+WH +ERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT           K I+I G
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.141e-48
Identity = 100/161 (62.11%), Postives = 117/161 (72.67%), Query Frame = -3
Query:  166 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSFALTNAPF---LARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 639
            MSLIPS FGGRR++VFDPFSLDVWDPF  F        PF   L+ E S F + R+DWKETP+AHVFKAD+PGL+         +GR+LQISGER+ E+E+KND WH VERSSGK +RRFRLP+NAKV+QVKASMENGVLTVT           KAI+I G
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDF--------PFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.229e-48
Identity = 97/158 (61.39%), Postives = 114/158 (72.15%), Query Frame = -3
Query:  166 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 639
            MSLIPS F GRR+NVFDPFSLDVWDP   F     + +    RE   F + R+DWKETP+AHVFKADLPGL+         + R+LQISGERS E+E+KND+WH VERSSGKFLRRFRLP+NAK+++VKASMENGVLTVT           K+IEI G
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CB290330 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.092e-47
Identity = 97/160 (60.62%), Postives = 119/160 (74.38%), Query Frame = -3
Query:  166 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGF--LSFALTNAPFLARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHCVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIFG 639
            MS+IPS FG RR+NV +PFSLD+WDPF  +  ++ + T++ F  +ET+ FAN  IDWKETPQAHVFKADLPGL+         EG++LQISGER+KE+EEKN+KWH VE SSGKFLRRFRLP+NA V++VKA MENGVLTVT           K+I I G
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEF-GKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
The following BLAST results are available for this feature:
BLAST of CB290330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP17_ARATH7.597e-5465.1917.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17C_ARATH1.871e-5266.6717.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS181_ARATH1.213e-5165.0018.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_DAUCA3.529e-5164.5617.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP16_SOYBN8.692e-5062.1118.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP13_SOYBN2.529e-4964.5617.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA2.141e-4860.7618.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_SOYBN2.141e-4862.1117.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA6.229e-4861.3918.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP12_DAUCA3.092e-4760.6318.0 kDa class I heat shock protein OS=Daucus caro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ag12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ag12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290330 ID=CB290330; Name=CB290330; organism=Citrus sinensis; type=EST; length=680bp
TCCTGAAACTCTTGTAAACACACAAACATAATCACATCAAATTAAACAGG
GGTGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTTG
CTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATT
TACACTTATCACTTAGCCAAAGATCTCAATGGCCTTAACTTCAGGTTTCT
TCTCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTG
GCCTTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAG
GAACTTGCCACTGCTCCTCTCGACGCAATGCCACTTGTCATTCTTCTCTT
CCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAAAATCCTGCCCTCTTCA
ACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAA
TACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATT
GGGATGTTTCCCTAGCCAAAAACGGCGCGTTGGTAAGGGCAAAGGACAAA
AACCCGTCGAAAGGATCCCATACATCTAATGAAAATGGATCGAACACGTT
GGTTCTTCGGCCACCGAAAATGCTTGGAATGAGTGACATTATGGCAAACT
GGGGCGCTAATTAAATGCTCAACAACTTCA
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