CB290334

Overview
NameCB290334
Unique NameCB290334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8816 contig Csv1_Contig8816:94..911. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB290334 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.908e-19
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = -2 
Query:  602 IFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 817
            +FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:   77 VFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CB290334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC4.908e-1956.94Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290334 ID=CB290334; Name=CB290334; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTCTTCGAACACTGGGAACAGACTTTATCTAACAG
CAAACATAACTGTACATTGGACAAGACTGGATAAAAGGTTAATTTGAAAG
CAAACACCTAAGAAACTTGAAAGGAGCTATAGCTACAAAGAAAGCTGGGT
GCTACATTTCTCACAAGCATACACTATTTCCATTCCAGTTGATGATTTTT
TGCTACACTCATTTTGTTATTCACATGGACCCTCTTGCAGCTTGCATCCC
CACAAACTTTTTTTCCCCCAAACCGCGGATTTTTAACTGTTGGCTAATAT
CTCAAGTGGAGAAGAAAGATCTTCTAACCTTCTACTCTGTGGCTGCAAAA
ACTGCTGGCCCTTCCACCTTAAATGTAGCACCCCAGATCTCTTCTTCCGC
AGCAGGAACCGCAGTGATCTTGTTCTTTGGATTCTCAAAGCTTCTCAGTC
CTCCAACTGCTGTTGAGAAGAAACAACCTTGAGGGAAAGAAGCAAGTGAC
TTGCCGCAAGCACCTTTGAGCAAGTCAGCATCATCAGCAAAGGCAACATG
TCCATCAGCAGTGATTCCCCAATAAAGAGGAACCTTACCAAATTGGTCAG
AAGCCACAAACAAGGTGGAGGTGGACTTGTCGTAGACAATGAAGGCAAAG
TACCCACTAAGGTGGCCAACGACATGGTTCGGTGGGTAAGGGGCCCGATC
ACGCAGAGCCTTGTATGCCTCAATCACCAAGATCACTTCATTTGCCGACT
TAGCTAGTCCATATTGCTGCCTCAGGCTTCCCAAGTTATCAAGTGCTCCC
TCAAACAAGCAAAAGATC
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