CB290341

Overview
NameCB290341
Unique NameCB290341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290341_ssr63 microsatellite CB290341_ssr63:63..74. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5644 contig Csv1_Contig5644:11..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL222_ARATH (60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.720e-39
Identity = 80/108 (74.07%), Postives = 89/108 (82.41%), Query Frame = 1
Query:  103 TFVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 426
            +F I C KPV+DKIM+IASLEKFLQERIKVGGKAGALGDSVT+TREK+KITVT+D  FS              HNVRDWLRVIA+NKDR++YELRYFNIAENEGEEED
Sbjct:   17 SFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEGEEED 124          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL223_ARATH (60S ribosomal protein L22-3 OS=Arabidopsis thaliana GN=RPL22C PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.484e-38
Identity = 78/108 (72.22%), Postives = 88/108 (81.48%), Query Frame = 1
Query:  103 TFVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 426
            +F I C KPV+DKIM+IASLEKFLQERIKVGGKAGALGDSV++TREK+KITVT+D  FS              HNVRDWLRVIA+NKDR++YELRYFNIAENE EEED
Sbjct:   17 SFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEAEEED 124          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL221_ARATH (Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana GN=RPL22A PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.973e-27
Identity = 61/108 (56.48%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  103 TFVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 426
            +FVI C KPV+D I++IA+LEKFLQERIKV GKAGALG+SV++TR   KI V ++SNFS              +N+RDWLRVIASNKD++VYE+RYF I +     E+
Sbjct:   19 SFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDEVASYEE 126          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22_RAT (60S ribosomal protein L22 OS=Rattus norvegicus GN=Rpl22 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.120e-22
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 1
Query:  106 FVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 426
            F + C  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS              +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22_PIG (60S ribosomal protein L22 OS=Sus scrofa GN=RPL22 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.911e-22
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 1
Query:  106 FVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 426
            F + C  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS              +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22_MOUSE (60S ribosomal protein L22 OS=Mus musculus GN=Rpl22 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.911e-22
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 1
Query:  106 FVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 426
            F + C  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS              +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22_MACFA (60S ribosomal protein L22 OS=Macaca fascicularis GN=RPL22 PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 1.911e-22
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 1
Query:  106 FVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 426
            F + C  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS              +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22_HUMAN (60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.911e-22
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 1
Query:  106 FVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 426
            F + C  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS              +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22_ICTPU (60S ribosomal protein L22 OS=Ictalurus punctatus GN=rpl22 PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.496e-22
Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 1
Query:  106 FVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 426
            F + C  PVED IMD A+ E+FLQERIKV GKAG LG   V++ R K+KITVTSD  FS              +N+RDWLRV+A+ K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVSIERSKSKITVTSDIPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKES--YELRYFQINQDEEEEED 126          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22_CHICK (60S ribosomal protein L22 OS=Gallus gallus GN=RPL22 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 57/108 (52.78%), Postives = 72/108 (66.67%), Query Frame = 1
Query:  106 FVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 426
            F + C  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS              +N+RDWLRV+A++K+   YELRYF I ++E EEE+
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEEE 126          
The following BLAST results are available for this feature:
BLAST of CB290341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL222_ARATH1.720e-3974.0760S ribosomal protein L22-2 OS=Arabidopsis thalian... [more]
RL223_ARATH2.484e-3872.2260S ribosomal protein L22-3 OS=Arabidopsis thalian... [more]
RL221_ARATH1.973e-2756.48Putative 60S ribosomal protein L22-1 OS=Arabidopsi... [more]
RL22_RAT1.120e-2253.7060S ribosomal protein L22 OS=Rattus norvegicus GN=... [more]
RL22_PIG1.911e-2253.7060S ribosomal protein L22 OS=Sus scrofa GN=RPL22 P... [more]
RL22_MOUSE1.911e-2253.7060S ribosomal protein L22 OS=Mus musculus GN=Rpl22... [more]
RL22_MACFA1.911e-2253.7060S ribosomal protein L22 OS=Macaca fascicularis G... [more]
RL22_HUMAN1.911e-2253.7060S ribosomal protein L22 OS=Homo sapiens GN=RPL22... [more]
RL22_ICTPU2.496e-2253.7060S ribosomal protein L22 OS=Ictalurus punctatus G... [more]
RL22_CHICK5.560e-2252.7860S ribosomal protein L22 OS=Gallus gallus GN=RPL2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290341 ID=CB290341; Name=CB290341; organism=Citrus sinensis; type=EST; length=661bp
GTCCGTTGGGAAATTGTACAATTCGTAGTGCGGCGGAGCAGCCTCGGGAA
AATGAGTCGCGGAGCAGCAGCAGCAGGGGTGAAGGGGAAGAAAAAGGGAG
CGACCTTCGTGATCCACTGCGGGAAGCCTGTGGAGGACAAAATCATGGAC
ATTGCGTCCTTGGAAAAGTTCCTCCAGGAGCGGATCAAGGTCGGCGGCAA
GGCTGGTGCCCTTGGGGATTCAGTTACCGTCACCCGTGAGAAGACCAAGA
TCACCGTCACTTCTGACAGCAACTTCTCTAAGAGGTATCTTAAATATTTG
ACCAAGAAGTACTTGAAGAAACACAATGTAAGAGATTGGCTCCGAGTAAT
TGCTTCAAACAAGGACCGAAGTGTCTATGAGCTGCGATACTTCAACATTG
CTGAGAATGAGGGAGAGGAGGAAGACTGAAGATCCATTTCAGTATTTCCT
CATATTATATCTATTCTGATTACTTGTTCTAGCTCTTTTTTCTTTTTTTC
TCCTGCGATCAAATCTGTGGACTTGTTTGAATTGTTTATGAGATCATTCT
TAGTTTATGTTCTGTTGAAATTTTGTTTACTTTTTAGATATATGTTTTTT
TTTTTGGGTTGTATAAGATGCTTTAATACTATGCCAGTTTTTTCTAAAAA
AAAAAAAAAAA
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