CB290360

Overview
NameCB290360
Unique NameCB290360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 420.239 bits (1079), Expect = 7.392e-117
Identity = 198/223 (88.79%), Postives = 214/223 (95.96%), Query Frame = -3
Query:  206 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 874
            QIRKMKGLKQKKAHLMEIQ+NGG++A KVD+ Y FFEK+IP+DAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKK+YK+GK+ QESH+A TEFDRTEKDITPMGGFPHYGVV  DYL+IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTT EK +++G+LKA
Sbjct:  167 QIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 408.683 bits (1049), Expect = 2.226e-113
Identity = 191/221 (86.43%), Postives = 211/221 (95.48%), Query Frame = -3
Query:  212 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRL 874
            QIRKMKGLKQKKAH+MEIQ+NGG++AQKVDFAY FFEKQIPI+AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTE+NKKIY+LGK   E+H+AMTE+DRTEKD+TPMGGFPHYG+V +DYL+IKGCCVGPKKRVVTLRQSLL QTSRLALEEIKLKFIDT+S FGHGRFQT+ EK ++Y R+
Sbjct:  167 QIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 406.757 bits (1044), Expect = 8.458e-113
Identity = 189/220 (85.91%), Postives = 209/220 (95.00%), Query Frame = -3
Query:  215 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGR 874
            QIRKMKGLKQKKAHL EIQ+NGG +A+KVD+A   FEKQ+P+DA+FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKK+Y++GK  QE+HSAMTE+DRTEKDITPMGGFPHYG+V EDYL+IKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIKLKFID +S  GHGRFQT+QEKAK+YGR
Sbjct:  167 QIRKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 2.171e-84
Identity = 146/225 (64.89%), Postives = 186/225 (82.67%), Query Frame = -3
Query:  209 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA---SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 874
            Q++ MK  ++KKAH+MEIQ+NGG+VA+KVD+A    EKQ+P+D+VF +DEMID IGVTKGKG++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKKIY+LGK+    +   +  T++D TEK + PMGGFPHYG+VN+D+++I+GCCVG KKR +TLR+SL+ QT R A E+I LK+IDTSSKFGHGRFQT  EK  + G+LK
Sbjct:  167 QMKVMKH-REKKAHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEGKKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 390          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 303.908 bits (777), Expect = 7.721e-82
Identity = 145/221 (65.61%), Postives = 180/221 (81.45%), Query Frame = -3
Query:  209 LKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 853
            L+QKKAHLMEIQVNGG+VA+K+D+A    E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+FTVARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  173 LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 302.368 bits (773), Expect = 2.246e-81
Identity = 144/221 (65.16%), Postives = 180/221 (81.45%), Query Frame = -3
Query:  209 LKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 853
            L+QKKAHLMEIQVNGG+VA+K+D+A    E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  173 LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 301.982 bits (772), Expect = 2.934e-81
Identity = 144/221 (65.16%), Postives = 180/221 (81.45%), Query Frame = -3
Query:  209 LKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 853
            L+QKKAHLMEIQVNGG+VA+K+D+A    E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  173 LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 301.597 bits (771), Expect = 3.832e-81
Identity = 146/228 (64.04%), Postives = 178/228 (78.07%), Query Frame = -3
Query:  209 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE------SHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 874
            QIR +K  +QKKAH+MEIQ+NGGS+  KV +A    EK I +  VF +DEMID +GVTKGKG++GV +RW   +LPRKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKKIY++G            ++A TE+D T+K ITPMGGFPHYG VN D+++IKGCC+G KKR++TLR+SLLK T R ALE+IKLKFIDTSSK GHGRFQT  +K  + G LK
Sbjct:  167 QIRLIKQ-RQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 3.832e-81
Identity = 143/221 (64.71%), Postives = 179/221 (81.00%), Query Frame = -3
Query:  209 LKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 853
            L+QKKAHLME+QVNGG+VA+K+D+A    E+Q+P+  VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  173 LRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 2.484e-80
Identity = 145/222 (65.32%), Postives = 177/222 (79.73%), Query Frame = -3
Query:  209 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 874
            Q+RK   L QKKAHL EIQ+NGGSV++KVD+A   FEK + +D+VF+++EMID+I VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNGYHHRT +N K+Y++GK   E ++A TEFDRT+K ITPMGGF HYG VN D++++KG   G +KRVVTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  166 QVRKTP-LVQKKAHLAEIQLNGGSVSEKVDWAREHFEKTVSVDSVFEQNEMIDVIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKGGDEGNAA-TEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385          
The following BLAST results are available for this feature:
BLAST of CB290360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_ORYSJ7.392e-11788.7960S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL31_ARATH2.226e-11386.4360S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL32_ARATH8.458e-11385.9160S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL3_TOXCA2.171e-8464.8960S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_MOUSE7.721e-8265.6160S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_RAT2.246e-8165.1660S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3_HUMAN2.934e-8165.1660S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_DROME3.832e-8164.0460S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_BOVIN3.832e-8164.7160S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_ASHGO2.484e-8065.3260S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ba04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ba04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290360 ID=CB290360; Name=CB290360; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTTTTTTTTTAAGCCCAAAATACCGTAAGATGTATTAACGCGC
AAAAAAGAAACCATGCACAAATGAAGTTTCCAAGAACTGCCAGTGTAGCC
ATAGCCATATTAATTCAAAATAGAGACTAGAATGACCAAAAATCTTAGAT
GTTCAAAACTACCCTGAAACCAAAGGCAATCTCTTCTTCAACTTGGCCAA
AATCAAGCCTTGAGCCTTCCATAGTACTTGGCCTTCTCCTGCGTTGTCTG
GAACCGACCATGGCCGAACTTGGAGGATGTGTCAATGAACTTGAGCTTAA
TCTCCTCCAATGCAAGCCTAGACGTCTGCTTCAGTAGGGACTGCCTTAAC
GTCACAACACGCTTCTTAGGTCCAACACAGCAGCCCTTGATCAGCAGGTA
ATCTTCATTGACTACACCATAGTGGGGGAAGCCTCCCATTGGGGTGATAT
CCTTCTCCGTCCTGTCAAATTCAGTCATGGCAGAATGAGACTCCTGGCTG
GCCTTCCCAAGCTTGTAAATTTTCTTGTTCATCTCTGTACGGTGATGGTA
GCCGTTCTGCCCAGCTCTAGCAACGGTAAAGGAGACCCTAGCCGGATGCC
AGGCACCAATACAAGCAACCTTGCGTAGACCACGGTGAGTCTTACGAGGG
AGACGAGTAACACCCCAACGAGTAACAACACCCTCATATCCCTTACCTTT
GGTCACACCAATAATGTCAATCATCTCATCTTTCTGGAACACAGCATCAA
TAGGAATCTGTTTCTCGAAGAAACCATAAGCAAAGTCAACCTTCTGGGCA
ACTGATCCACCATTGACCTGGATCTCCATCAGATGGGCCTTCTTCTGCTT
CAGTCCCTTCATTTTTCTGATCTGGG
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