CB290374

Overview
NameCB290374
Unique NameCB290374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2881 contig Csv1_Contig2881:4..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB290374 vs. ExPASy Swiss-Prot
Match: FBL5_ARATH (F-box/LRR-repeat protein 5 OS=Arabidopsis thaliana GN=FBL5 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 8.463e-70
Identity = 122/157 (77.71%), Postives = 138/157 (87.90%), Query Frame = -1 
Query:  256 GWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESM-KGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTASFIPHPAH 723
            GWCE++ D GVM+LAYGCPDLR+LDLC CV ITD+SV+ALAN C HLRSLGLYYCRNITDRA+YSLAQSGVKNK  +W ++ KG++DEEGL+SLNISQCT LTP AVQA+CDTFPALHTCSGRHSLVMSGCLNL SVHC C  Q+HRT +  PHPAH
Sbjct:  204 GWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCRNITDRAMYSLAQSGVKNKHEMWRAVKKGKFDEEGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLNLQSVHCACILQAHRTHTVYPHPAH 360
The following BLAST results are available for this feature:
BLAST of CB290374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBL5_ARATH8.463e-7077.71F-box/LRR-repeat protein 5 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ba12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ba12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290374 ID=CB290374; Name=CB290374; organism=Citrus sinensis; type=EST; length=723bp
TTTTTTTTTTTTTTTTTATGACTCGTTTTTGGTTATTTATATGGCCTGTC
TGAACAAAGGCCTATATTTCTCTAATGTTGTCCATAACCATCCAAAACAT
AGCCCTGACATTACAAAAAAAAATAAAATGAAATAAACAAGACCGCTAGA
AGCAGCCTAACAGTCTCTTTAACTTTTAACACAACCATATGTACAGTCAA
GAACGCTCATATCTCTGGGCTCTCAAACAAACCAGCTTGAAGTCTGCACT
GTTCAATGAGCTGGGTGAGGAATAAAGCTAGCTGTGCGGTGTGATTGGCC
GGCGCAAACGCAATGCACGGACGTCAAATTCAAGCATCCACTCATGACGA
GGGAATGCCTACCAGAGCAGGTGTGAAGCGCAGGAAATGTATCACAAAGT
GCCTGGACAGCTGGAGGGGTGAGAGCTGTACACTGGCTGATATTAAGACT
CTGAAGCCCTTCCTCATCATACCTACCTTTCATAGATTCCCAAATTCCAG
GTTTGTTCTTCACTCCGCTTTGGGCAAGTGAATATATTGCTCGGTCTGTG
ATGTTGCGACAATAGTACAGACCAAGGGATCTCAAATGGGGACACCCATT
TGCCAAAGCAATCACACTATCATCTGTTATACATACACAGCCACACAAGT
CCAGGGATCTGAGATCAGGGCATCCATATGCTAAATTCATGACTCCTACA
TCACCAACATCCTCACACCATCC
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