CB290380

Overview
NameCB290380
Unique NameCB290380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290380 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.552e-37
Identity = 70/122 (57.38%), Postives = 87/122 (71.31%), Query Frame = 3
Query:    3 DXSLVXAHKIPMLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGG--VACKSACEAFRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 362
            D SLV    +P+ + P+GG G +C ST C  ++N  CP+EL   +D GS G  + CKSAC A  QPQYCC GA+ TPDTC P+ +S++FK+ CP AYSYAYDDKSSTFTC  GP+Y ITFCP
Sbjct:  127 DVSLVDGFNLPIKLAPRGGSG-DCNSTSCAANINTVCPAEL---SDKGSDGSVIGCKSACLALNQPQYCCTGAYGTPDTCPPTDFSKVFKNQCPQAYSYAYDDKSSTFTCFGGPNYEITFCP 244          
BLAST of CB290380 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.076e-35
Identity = 68/120 (56.67%), Postives = 82/120 (68.33%), Query Frame = 3
Query:    3 DXSLVXAHKIPMLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 362
            D SLV  + +P+ V  +GG G +C +T C  ++NA CP+EL+V     S  +ACKSAC AF QPQYCC GAF T  TC  + YS+IFK  CP AYSYAYDD +STFTC   PDY ITFCP
Sbjct:  126 DVSLVDGYNLPVSVATRGGTG-DCKATSCRANVNAVCPAELQVKGSDASV-LACKSACTAFNQPQYCCTGAFDTARTCPATKYSRIFKQQCPQAYSYAYDDSTSTFTCSGAPDYVITFCP 243          
BLAST of CB290380 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.504e-34
Identity = 68/120 (56.67%), Postives = 80/120 (66.67%), Query Frame = 3
Query:    3 DXSLVXAHKIPMLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 362
            D SLV    +PM V PQGG G +C +  C  ++NA CPSEL+     GS  VAC SAC  F  PQYCC    +TP+TC P+ YS+IF +ACP AYSYAYDDK  TFTC  GP+Y ITFCP
Sbjct:  128 DVSLVDGFNLPMSVTPQGGTG-DCKTASCPANVNAVCPSELQKKGSDGSV-VACLSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 245          
BLAST of CB290380 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.883e-34
Identity = 66/120 (55.00%), Postives = 81/120 (67.50%), Query Frame = 3
Query:    3 DXSLVXAHKIPMLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 362
            D SLV    +PM V PQGG G  C  + C  ++N ACP++L+V    GS  ++CKSAC AF   +YCC     TP+TC P+ YS+IF+  CP AYSYAYDDK+STFTC  GPDY ITFCP
Sbjct:   95 DVSLVDGFNLPMSVAPQGGTG-ECKPSSCPANVNMACPAQLQVKAADGSV-ISCKSACLAFGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 212          
BLAST of CB290380 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.883e-34
Identity = 70/120 (58.33%), Postives = 83/120 (69.17%), Query Frame = 3
Query:    3 DXSLVXAHKIPMLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 362
            D SLV  + + + + P GG G +C   GCV DLNAACP  LKVM       VACKSACE F   QYCC GA   P+TC P+ YS+IFK+ACP AYSYAYDD++STFTC +G +Y ITFCP
Sbjct:  124 DVSLVDGYNVKLGIRPSGGSG-DCKYAGCVSDLNAACPDMLKVMDQNNV--VACKSACERFNTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTC-TGANYEITFCP 239          
BLAST of CB290380 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.311e-33
Identity = 67/120 (55.83%), Postives = 79/120 (65.83%), Query Frame = 3
Query:    3 DXSLVXAHKIPMLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 362
            D SLV    +PM V PQGG G  C ++ C  D+N  CP+ L+V    GS  +ACKSAC AF QP+YCC      P+TC P  YS++FK+ CP AYSYAYDDKSSTFTC   P Y ITFCP
Sbjct:  129 DVSLVDGFNLPMSVAPQGGTG-KCKASTCPADINKVCPAPLQVKGSDGSV-IACKSACLAFNQPKYCCTPPNDKPETCPPPDYSKLFKTQCPQAYSYAYDDKSSTFTCSGRPAYLITFCP 246          
BLAST of CB290380 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.920e-33
Identity = 65/120 (54.17%), Postives = 80/120 (66.67%), Query Frame = 3
Query:    3 DXSLVXAHKIPMLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 362
            D SLV    +PM V PQGG G  C  + C  ++N  CP+ L+V    GS  ++CKSAC AF   +YCC    +TP+TC P+ YS+IF+  CP AYSYAYDDK+STFTC  GPDY ITFCP
Sbjct:  129 DVSLVDGFNLPMSVAPQGGTG-ECKPSSCPANVNKVCPAPLQVKAADGSV-ISCKSACLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 246          
BLAST of CB290380 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 5.506e-32
Identity = 65/120 (54.17%), Postives = 78/120 (65.00%), Query Frame = 3
Query:    3 DXSLVXAHKIPMLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 362
            D SLV  + + M ++P  G G  C+  GCV DLN  CP  L+V +  G   VACKSAC AF  PQYCC G F  P +CKP+ YS+IFK ACP AYSYAYDD +S  TC S  +Y +TFCP
Sbjct:  122 DVSLVDGYNLAMSIMPVKGSG-QCSYAGCVSDLNQMCPVGLQVRSRNGKRVVACKSACSAFNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDDPTSIATC-SKANYIVTFCP 239          
BLAST of CB290380 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.731e-30
Identity = 62/120 (51.67%), Postives = 72/120 (60.00%), Query Frame = 3
Query:    3 DXSLVXAHKIPMLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 362
            D SLV    +PM V PQGG G  C    C  ++N  CPSEL+ +   GS  VAC SAC  F +PQYCC     T + C P+ YSQIF   CP AYSYA+DD    FTC  GP+Y ITFCP
Sbjct:  125 DVSLVDGFNLPMSVTPQGGTG-TCKMGSCAANVNLVCPSELQKIGSDGSV-VACLSACVKFGEPQYCCTPPQETKEKCPPTNYSQIFHEQCPDAYSYAFDDNKGLFTCSGGPNYLITFCP 242          
BLAST of CB290380 vs. ExPASy Swiss-Prot
Match: PRR3_JUNAS (Pathogenesis-related protein OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.006e-25
Identity = 60/120 (50.00%), Postives = 72/120 (60.00%), Query Frame = 3
Query:    3 DXSLVXAHKIPMLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 362
            D SLV    IP+ + P       CT+  C  D+NA CPSELKV  DGG     C SAC  F+  QYCC  A+   D C  + YS+IFK+ CP AYSYA DD ++TF C SG DY+I FCP
Sbjct:  119 DVSLVDGFNIPLAINPTNAQ---CTAPACKADINAVCPSELKV--DGG-----CNSACNVFKTDQYCCRNAYV--DNCPATNYSKIFKNQCPQAYSYAKDD-TATFACASGTDYSIVFCP 225          
The following BLAST results are available for this feature:
BLAST of CB290380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
TLP1_PYRPY2.552e-3757.38Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]
TLP1_CASSA9.076e-3556.67Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]
TLP_PRUAV4.504e-3456.67Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TP1B_MALDO5.883e-3455.00Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
PR5_ARATH5.883e-3458.33Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TLP1_PRUPE1.311e-3355.83Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
TP1A_MALDO2.920e-3354.17Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TLPH_ARATH5.506e-3254.17Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
TLP2_PRUPE6.731e-3051.67Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]
PRR3_JUNAS1.006e-2550.00Pathogenesis-related protein OS=Juniperus ashei PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bb03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bb03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290380 ID=CB290380; Name=CB290380; organism=Citrus sinensis; type=EST; length=636bp
ATGATGNTAGTTTGGTNGANGCCCACAAAATCCCCATGCTTGTCGTTCCT
CAGGGTGGTGACGGACCCAATTGTACAAGCACGGGATGCGTTGTCGACTT
GAACGCCGCGTGTCCTTCGGAGCTTAAGGTTATGACCGACGGTGGCAGCG
GAGGTGTTGCTTGCAAGAGCGCGTGCGAAGCCTTTAGGCAGCCGCAGTAC
TGTTGTAATGGCGCGTTTAGTACTCCCGATACATGCAAGCCATCTACTTA
TTCTCAGATCTTCAAAAGCGCGTGTCCTCACGCTTACAGCTATGCGTACG
ATGACAAATCCAGCACCTTTACATGCGGTTCGGGGCCCGACTACACCATA
ACCTTCTGTCCTTCCCCCAACACCAGCCAGAAATCCTCACAAGGTGGAAA
CAGTGGAAGCAATGCGCCCAACACAGGGACCATCGATAGCACAATGGTGT
ACGAAGGTGCGTTGGACCAAAGCAGCGCGTCACCTTCCACGTATACCTAC
GTGCTGGGATCGCATGGCAATGGCATTGCGGGTATAGTCAGCATCACATT
CGCCGTCTGGAGGGCATGGCAACTCTTTTAATTTCTTCGATATTCACTAA
CTTAGGATAGGCCCACGGGCATACAATCATACAGAA
back to top