CB290388

Overview
NameCB290388
Unique NameCB290388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290388 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.014e-17
Identity = 44/120 (36.67%), Postives = 72/120 (60.00%), Query Frame = 2
Query:  212 IDGVATKDIHINPSSCLTLRIFLPNTVVESSLADAHVYKGYAPVTAGRNRHKKLPVMLQFHGGGFVSGSNDSVANDAFCRRIAKLCDVIVVAVGYRLAPESRYPSSFEDGLNVLNWIKKQ 571
            +DGV + D H++ ++ L  RI+ P +++  +        G   +T   +  + +PV++ FHGG F   S +S   D FCRR+  +C V+VV+V YR +PE RYP +++DG N LNW+K +
Sbjct:   60 LDGVFSFD-HVDSTTNLLTRIYQPASLLHQTR------HGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSR 172          
BLAST of CB290388 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.949e-14
Identity = 44/137 (32.12%), Postives = 68/137 (49.64%), Query Frame = 2
Query:  197 SNPTFIDGVATKDIHINPSSCLTLRIFLPNTVVESSLADAHVYKGYAPVTAGRNRHKKLPVMLQFHGGGFVSGSNDSVANDAFCRRIAKLCDVIVVAVGYRLAPESRYPSSFEDGLNVLNWIKKQANLAQLGNRHGK 607
            +N   ++GV++ D  I+ S  L +RI+      ++    A V +            +  PV++ FHGG FV  S  S   D+ CRR  KL   +VV+V YR APE RYP +++DG   L W+  Q  +   G+   +
Sbjct:   55 ANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQAR 191          
BLAST of CB290388 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.548e-13
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = 2
Query:  197 SNPTFIDGVATKDIHINPSSCLTLRIFLPNTVVES-SLADAHVYKGYAPVTAGRNRHKKLPVMLQFHGGGFVSGSNDSVANDAFCRRIAKLCDVIVVAVGYRLAPESRYPSSFEDGLNVLNWIKKQA 574
            +N   ++GV + D+ I+  + L  R++ P     S S+ D        PV       + +PV++ FHGG F   S +S   D  CRR+  LC  +VV+V YR APE+RYP +++DG  VL W+   +
Sbjct:   55 ANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQ-----NPVDG-----EIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS 171          
BLAST of CB290388 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.003e-12
Identity = 44/131 (33.59%), Postives = 67/131 (51.15%), Query Frame = 2
Query:  191 MASNPTFIDGVATKDIHINPSSCLTLRIFLPNTVVES---SLADAHVYKGYAPVTAGRNRHKKLPVMLQFHGGGFVSGSNDSVANDAFCRRIAKLCDVIVVAVGYRLAPESRYPSSFEDGLNVLNWIKKQA 574
            + +N   +DGV + D+ I+    L  R++ P    +    S+ D        PV         +PV+L FHGG F   S +S   D  CRR+  LC  +VV+V YR APE+ YP +++DG   LNW+  ++
Sbjct:   53 VTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLE-----KPVDGDI-----VPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS 173          
The following BLAST results are available for this feature:
BLAST of CB290388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L2_ARATH3.014e-1736.67Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ6.949e-1432.12Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L3_ARATH1.548e-1334.65Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH1.003e-1233.59Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01bb07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290388 ID=CB290388; Name=CB290388; organism=Citrus sinensis; type=EST; length=746bp
GAAATCTCAGCATCTGTTTTTTATTGAAAAAGGCAAAAAAAAAATGCCAA
CGTTAGCCGTGAAACTCTACAGTATCTTCTTCAAACTCAACAAGAAACAT
CAGCTGTATAATCTAAGAATACAAACAGAGTCATCATCTCTTCAAGATAG
AAACCCATTTGGAACGACATGTCGTCCCGACGAGGCCGTGATGGCCAGCA
ACCCCACGTTCATTGATGGGGTGGCAACTAAAGATATTCACATAAACCCC
TCCTCTTGTCTCACCTTGCGTATCTTTCTGCCAAACACAGTTGTCGAATC
CTCATTGGCTGACGCTCATGTTTACAAAGGTTATGCTCCTGTGACGGCGG
GGAGGAACCGTCACAAGAAACTGCCTGTTATGTTGCAGTTTCACGGTGGG
GGATTCGTGAGTGGGAGCAATGACTCCGTTGCAAACGATGCGTTCTGTAG
GAGGATTGCGAAGCTGTGTGATGTGATTGTTGTGGCGGTTGGGTATAGGT
TGGCTCCAGAGAGTAGATATCCATCGTCGTTTGAGGATGGGTTGAACGTG
TTGAATTGGATTAAGAAGCAGGCTAATTTAGCGCAGCTTGGTAATCGCCA
TGGTAAGAGATTGGATGGTATAAGAGAGAAGCATGTGTTTGATGAGTTCG
GTGTTTCAATGCTTGAGCCTTGGTTGGCTGCTCATGGTGATCCCTCCAGG
TCTTCTTTATTGCTTTGGTTCTACAATTTGTGATTTCAATGCATTT
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