CB290428

Overview
NameCB290428
Unique NameCB290428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 261.536 bits (667), Expect = 2.359e-69
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = -2 
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.359e-69
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = -2 
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H33_PINPS (Histone H3.3 OS=Pinus pinaster PE=2 SV=3)

HSP 1 Score: 261.536 bits (667), Expect = 2.359e-69
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = -2 
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H33_ORYSJ (Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=2 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 2.359e-69
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = -2 
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.359e-69
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = -2 
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 261.536 bits (667), Expect = 2.359e-69
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = -2 
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 2.359e-69
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = -2 
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 2.359e-69
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = -2 
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 261.536 bits (667), Expect = 2.359e-69
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = -2 
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 261.536 bits (667), Expect = 2.359e-69
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = -2 
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of CB290428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H33_VITVI2.359e-6998.53Histone H3.3 OS=Vitis vinifera PE=2 SV=3[more]
H33_TOBAC2.359e-6998.53Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1[more]
H33_PINPS2.359e-6998.53Histone H3.3 OS=Pinus pinaster PE=2 SV=3[more]
H33_ORYSJ2.359e-6998.53Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3... [more]
H33_ORYSI2.359e-6998.53Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H33_ORYCO2.359e-6998.53Histone H3.3 OS=Oryza coarctata PE=2 SV=3[more]
H33_MEDSA2.359e-6998.53Histone H3.3 OS=Medicago sativa PE=1 SV=2[more]
H33_LOLTE2.359e-6998.53Histone H3.3 OS=Lolium temulentum PE=2 SV=2[more]
H33_LOLMU2.359e-6998.53Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=... [more]
H33_GOSHI2.359e-6998.53Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bd09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290428 ID=CB290428; Name=CB290428; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTATCCAACAAATATCAAATCCCAAATATTCTTCA
ATCCATCATATCATTCTTTACATGGAAAAACCGGAATAAAGAAAAACTAG
CAAACTAAATAGGAAACTGACGACTACATAAGGAATCACAAATTAAGCAC
GCTCGCCTCGGATTCGCCTTGCCAGTTGAATATCCTTGGGCATAATGGGG
ACTCGCTTGGCATGGATAGCACAAAGGTTGGTGTCCTCGAACAGACCCAC
GAGATAAGCCTCTGCCGCTTCCTGCAGCGCAAGAACCGCGTGGCTTTGGA
ACCTCAAATCTGTCTTGAAATCTTGAGCAATTTCACGAACCAGCCGCTGA
AAAGGCAGCTTGCGGATCAAAAGCTCAGTGCTCTTCTGATATTTGCGGAT
TTCACGGAGGGCGACAGTTCCTGGACGGTAACGATGAGGCTTCTTGACTC
CACCAGTTGTTGGAGCAAATTTTCTTGCAGCCTTTGTGGCGAGCTGCTTC
CTCGGAGCCTTTCCTCCAGTTGACTTGCGCGCGGTTTGCTTCGTACGGGC
CATTACTCTTTAATCACCAACACAAACTGCAAAATGCACAGATCTGAATG
CAACCCTCGTG
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