CB290470

Overview
NameCB290470
Unique NameCB290470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig132 contig Csv1_Contig132:342..1172. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290470 vs. ExPASy Swiss-Prot
Match: UBC32_ARATH (Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.765e-56
Identity = 124/219 (56.62%), Postives = 144/219 (65.75%), Query Frame = -1
Query:  196 TQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAP--PVPQLSTCEEQPG-NREGEAQASSIDAMVAGAGEGLPAP---VGDRIIEEVQEDXXXXXXXXXXXAG-TSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLRKFMKSNGHGAVFMD 831
            T TKICLSISN+HPEHWQPSWSVRTALVALIAFMPT+PNGALGS+DY K+ERR LAIKSRE  PK+G+PERQK+IDEIH+Y+LSKA   P P    C + P    E  +Q    +A+       +      V D+IIEE  E            A   + EV   AS    Q       QKP DDRLFTWAAVGLTIAI+VLLL+KF+KSNG+   FMD
Sbjct:   88 TNTKICLSISNYHPEHWQPSWSVRTALVALIAFMPTSPNGALGSVDYPKDERRTLAIKSRETPPKYGSPERQKIIDEIHQYILSKATVVPKPLPLECSQAPSIVSEAHSQVEPQEAITVVEERSIATTDTIVDDQIIEETAEAVNTAASVVPAAAPLPAVEVVVKASVSGEQRMARRAAQKPVDDRLFTWAAVGLTIAIMVLLLKKFIKSNGYSTGFMD 306          
BLAST of CB290470 vs. ExPASy Swiss-Prot
Match: UB2J1_MOUSE (Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus GN=Ube2j1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.638e-19
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = -1
Query:  649 KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 822
            KICLSIS HHPE WQPSWS+RTAL+A+I FMPT   GA+GSLDY  EERRALA KS++
Sbjct:   89 KICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRALAKKSQD 146          
BLAST of CB290470 vs. ExPASy Swiss-Prot
Match: UB2J1_HUMAN (Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens GN=UBE2J1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.638e-19
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = -1
Query:  649 KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 822
            KICLSIS HHPE WQPSWS+RTAL+A+I FMPT   GA+GSLDY  EERRALA KS++
Sbjct:   89 KICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRALAKKSQD 146          
The following BLAST results are available for this feature:
BLAST of CB290470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UBC32_ARATH6.765e-5656.62Ubiquitin carrier protein E2 32 OS=Arabidopsis tha... [more]
UB2J1_MOUSE8.638e-1974.14Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus... [more]
UB2J1_HUMAN8.638e-1974.14Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290470 ID=CB290470; Name=CB290470; organism=Citrus sinensis; type=EST; length=831bp
TTTTTTTTTTTTTTTTTGGACAATCTGGCTTACAATTGCGTATGAAATTA
CAGTCATGGGGTATAAAAGATCATATATACGACAAACTGTTTCAATAAAG
ATTAATGCCCTTGATGATAATTTCTCCCTTAACTACTATGACTTGGAAAT
TTTGAACTCCCAGATTTGACGAAACCGATAGCATATCTACGAACCATCCA
TGAAAACAGCACCATGACCATTAGATTTCATGAATTTCCTCAGTAAAAGA
ACCAAAATTGCAATAGTAAGTCCAACAGCAGCCCATGTGAACAGTCGATC
ATCAGCAGGTTTTTGAACCCTAGTCTCCGGTTTTGGCTGAAGCTGGACTC
CAGAGGCGTTGGCAGGAACCTCTCTTGATGTTCCAGCCACTACGGGGTTG
GGATTCACGCTGGCAGGAACATCCTCCTGAACTTCTTCAATAATCCTATC
ACCTACTGGGGCTGGGAGCCCTTCCCCAGCACCCGCAACCATGGCGTCTA
TGGAACTTGCCTGTGCTTCACCCTCCCTGTTGCCAGGCTGTTCTTCACAG
GTGCTGAGCTGAGGGACAGGGGGTGCCTTGCTTAACATATATTCATGGAT
CTCATCAATGAGTTTTTGACGTTCAGGAGTCCCAAATTTTGGGGCAGCTT
CACGAGATTTGATGGCCAGAGCACGCCTCTCTTCCTTCTTATAATCTAGT
GAGCCCAAAGCACCATTTGGATTGGTGGGCATGAAAGCAATTAGTGCTAC
AAGAGCAGTCCTCACACTCCAAGATGGTTGCCAGTGCTCCGGATGATGAT
TCGAAATGCTTAAGCATATTTTGGTCTGAGT
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