CB290473

Overview
NameCB290473
Unique NameCB290473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.425e-58
Identity = 114/172 (66.28%), Postives = 134/172 (77.91%), Query Frame = 1
Query:  214 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 729
            KP +L+ EKLG+AG++LL EF +VDC+Y+LSPE+L  K++  DALI RSGTKV R+VFE++ GRLKVVGRAGVGIDNVDL AATE GCL                        RNVAQADAS+KAGKW+R+KYVGVSLVGKTLAV+GFGKVG+EVARRAKGLGM VI+HDPY
Sbjct:   82 KPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMTVISHDPY 253          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.772e-33
Identity = 72/169 (42.60%), Postives = 101/169 (59.76%), Query Frame = 1
Query:  223 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 729
            +L+ + L +  + +L E   V+ A  L+ EEL  KI   D L+ RSGTKV RDV E  A +LKV+GRAGVG+DN+D+ AATE G +                        RN+ QA AS+K G+W R ++ G+ L GKTL V+G G++G +V +RAK  GM++I +DPY
Sbjct:    4 ILVTDPLHEDAIKILEEVGEVEVATGLTKEELLEKIKDADVLVVRSGTKVTRDVIEK-AEKLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATASLKRGEWDRKRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMNIIGYDPY 171          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.023e-31
Identity = 70/169 (41.42%), Postives = 101/169 (59.76%), Query Frame = 1
Query:  223 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 729
            VLIA+ + + G+  L E A V     ++PEEL   I   DA++ RS TKV R+V E+ A RLK++ RAGVG+DNVD+ AAT+ G +                        R +A AD SVK GKW++N+++G+ L GKTL ++G G++GS+V  R K  GM ++ +DPY
Sbjct:    6 VLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIEA-APRLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSVKEGKWEKNRFMGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVYDPY 173          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 66/170 (38.82%), Postives = 102/170 (60.00%), Query Frame = 1
Query:  223 VLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 729
            VL+AE + +  +D + +    V+    +S EEL  ++   +A++ RS TKV+ +V ++ A  LK++GRAGVG+DN+D+ AAT+ G +                        R + QAD SVK GKW+R K++G+ L GKT  V+G G+VG EVA+R K L M+V+A+DP+
Sbjct:    3 VLVAEPISEEAIDYMRKNGLEVEVKTGMSREELIREVPKYEAIVVRSQTKVDAEVIQA-AKNLKIIGRAGVGVDNIDINAATQRGIVVVNAPGGNTISTAEHAIALMLAAARKIPQADRSVKEGKWERKKFMGIELRGKTAGVIGLGRVGFEVAKRCKALEMNVLAYDPF 171          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.000e-27
Identity = 61/169 (36.09%), Postives = 98/169 (57.99%), Query Frame = 1
Query:  223 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 729
            VL+++ + Q G+D+L + A VD    LS  E+   +   DA++ RS TKV   + ++ + +LK++GRAGVG+DN+D+ AAT  G +                        R++  A+ SVK  KW+R +++G  +  KTL V+G GK+GS VA  AK +GM ++A+DP+
Sbjct:   32 VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGS-QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSVKESKWERKQFIGTEVYKKTLGVVGLGKIGSHVAGVAKAMGMKLLAYDPF 199          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_PONAB (D-3-phosphoglycerate dehydrogenase OS=Pongo abelii GN=PHGDH PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.535e-26
Identity = 66/143 (46.15%), Postives = 84/143 (58.74%), Query Frame = 1
Query:  298 NLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 726
            NLS EEL  ++  C+ LI RS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GKTL +LG G++G EVA R + LGM  I +DP
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVAIRMQSLGMKTIGYDP 176          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_PANTR (D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.619e-26
Identity = 65/143 (45.45%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  298 NLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 726
            NLS EEL  ++  C+ LI RS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GKTL +LG G++G EVA R +  GM  I +DP
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDP 176          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_MACFA (D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4)

HSP 1 Score: 119.013 bits (297), Expect = 2.619e-26
Identity = 65/143 (45.45%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  298 NLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 726
            NLS EEL  ++  C+ LI RS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GKTL +LG G++G EVA R +  GM  I +DP
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDP 176          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_HUMAN (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4)

HSP 1 Score: 119.013 bits (297), Expect = 2.619e-26
Identity = 65/143 (45.45%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  298 NLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 726
            NLS EEL  ++  C+ LI RS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GKTL +LG G++G EVA R +  GM  I +DP
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDP 176          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_RAT (D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.834e-26
Identity = 64/143 (44.76%), Postives = 82/143 (57.34%), Query Frame = 1
Query:  298 NLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 726
            NLS EEL  ++  C+ LI RS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW R K++G  L GKTL +LG G++G EVA R +  GM  + +DP
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTVGYDP 176          
The following BLAST results are available for this feature:
BLAST of CB290473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SERA_ARATH4.425e-5866.28D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
SERA_METJA3.772e-3342.60D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
SERA_METTH6.023e-3141.42D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
SERA_ARCFU6.233e-2838.82D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
SERA_SYNY39.000e-2736.09D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
SERA_PONAB1.535e-2646.15D-3-phosphoglycerate dehydrogenase OS=Pongo abelii... [more]
SERA_PANTR2.619e-2645.45D-3-phosphoglycerate dehydrogenase OS=Pan troglody... [more]
SERA_MACFA2.619e-2645.45D-3-phosphoglycerate dehydrogenase OS=Macaca fasci... [more]
SERA_HUMAN2.619e-2645.45D-3-phosphoglycerate dehydrogenase OS=Homo sapiens... [more]
SERA_RAT5.834e-2644.76D-3-phosphoglycerate dehydrogenase OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290473 ID=CB290473; Name=CB290473; organism=Citrus sinensis; type=EST; length=731bp
GCTCCCTCTCCCCATACGACGCCGCTTTAACCACCCCGAAAAATGGCCAC
GTCAGCAGCCTCCTGCGCTGCCTCCCTCCGTCAGCCTTCCCTCAAGCTAT
CACTGTCTTCCAAACACTCTCTTTCCCCTCTATTCTCCGTCTCCTTCAAC
CACAAGCGGGCCCCGCCGCGGCTCGTAATAATCGCATCCGCCGCCGCCGA
CGGCATCTCCTCAAAACCGACCGTTTTGATCGCCGAGAAGCTCGGACAGG
CCGGCTTGGATCTTCTCAACGAGTTCGCCAACGTGGACTGCGCATACAAC
TTGTCGCCAGAGGAGCTCTGCACGAAGATCTCGCTCTGCGACGCGCTGAT
CGGGCGCAGCGGCACGAAGGTCAATCGCGACGTGTTCGAGTCGTCAGCTG
GAAGGTTGAAGGTCGTTGGGAGAGCCGGTGTTGGTATTGATAATGTGGAT
CTGGCTGCGGCTACTGAGTTTGGTTGCTTGGTTGTGAACGCGCCGACGGC
GAATACCGTTGCGGCTGCTGAGCATGGGATCGCGCTTTTGGCTGCCATGG
CTAGAAATGTCGCCCAGGCTGATGCCTCTGTTAAGGCTGGAAAGTGGCAA
AGGAACAAATATGTGGGTGTCTCCCTTGTGGGTAAAACACTTGCTGTATT
GGGATTCGGAAAGGTTGGATCAGAAGTTGCTCGTCGTGCCAAGGGTCTGG
GTATGCATGTCATTGCACATGATCCGTATGC
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