CB290499

Overview
NameCB290499
Unique NameCB290499
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1856 contig Csv1_Contig1856:85..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 1.557e-112
Identity = 205/245 (83.67%), Postives = 220/245 (89.80%), Query Frame = 2
Query:   44 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 778
            EITNV EYEA+AK+KLPKMVYDYYASGAEDQWTL ENRNAFSRILFRPRIL DV+ IDMTTT+LGF ISMPIMIAPTA QKMAHPEGE          GTIMTLSSWATSSVEEV+STGPGIRFFQLYV K RNV AQLV+RAERAGFKAIALTVDTPRLGRREADIKNRFVLPP LTLKN+EG+ +GKMDK +DSGL+SYVA QIDRSL+WKDV WLQTITSLPILVKGV+TAEDA LA+Q+GA
Sbjct:    2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLAVQHGA 246          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 5.009e-111
Identity = 201/245 (82.04%), Postives = 220/245 (89.80%), Query Frame = 2
Query:   44 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 778
            EITNV EY+A+AK+KLPKMVYDYYASGAEDQWTLQENRNAF+RILFRPRIL DVSKIDMTTTVLGF ISMPIM+APTA QKMAHP+GE          GTIMTLSSWATSSVEEV+STGPGIRFFQLYV K+RNV  QLV+RAERAGFKAIALTVDTPRLGRRE+DIKNRF LPP+LTLKN+EGL +GKMD+ +DSGLASYVA QIDR+L+WKDV+WLQTIT LPILVKGVLT EDA +AIQ GA
Sbjct:    2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGA 246          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 394.43 bits (1012), Expect = 3.589e-109
Identity = 196/245 (80.00%), Postives = 219/245 (89.39%), Query Frame = 2
Query:   44 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 778
            EITNV EY+A+AK KLPKMVYDYYASGAEDQWTLQENRNAF+RILFRPRIL DV+KIDM TTVLGF ISMPIM+APTAFQKMAHP+GE          GTIMTLSSWATSSVEEV+STGPGIRFFQLYV K+R V  QLV+RAE+AGFKAIALTVDTPRLGRRE+DIKNRF LPP+LTLKN+EGL +GKMD+ +DSGLASYVA QIDR+L+WKD++WLQTIT++PILVKGVLT EDA +AIQ GA
Sbjct:    2 EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMATTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDIQWLQTITNMPILVKGVLTGEDARIAIQAGA 246          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 5.079e-63
Identity = 123/244 (50.41%), Postives = 170/244 (69.67%), Query Frame = 2
Query:   56 VMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIG---KMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYG 775
            + +YE  AK  LPK +YDYY SGA D+ TL +N  AFSR    PR+LR+V++ D++T+VLG  +SMPI +  TA Q+MAH +GE          GT M LSSWATSS+EEV+  GP  +R+ QLY+ K R V  +LV++AE+ G+KAI +TVDTP LG R  D++NRF LPP L +KN+E   +    + +  DDSGLA+YVA  ID S++W+D+KWL+ +TSLPI+ KG+L  +DA  A+++G
Sbjct:    8 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHG 251          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.930e-62
Identity = 125/244 (51.23%), Postives = 165/244 (67.62%), Query Frame = 2
Query:   56 VMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEG---LYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYG 775
            + +YE   +  L K VYDYY SGA DQ TL +N  AFSR    PR+LR+V+ ID++T+VLG  +SMPI +  TA Q MAH +GE          GT M LSSWATSS+EEV+  GP  +R+ QLY+ K R +  Q+VKRAE+ G+KAI +TVDTP LG R  D++NRF LPP L +KN+E     +  K +  D+SGLA YVA  ID SL+W D+ WL+ +TSLPI+VKG+L  +DA  A+++G
Sbjct:    8 ISDYEQHVRSVLQKSVYDYYRSGANDQETLADNIQAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPEALRWMQLYIYKDREISRQIVKRAEKQGYKAIFVTVDTPYLGNRIDDVRNRFKLPPQLRMKNFETNDLAFSPKGNFGDNSGLAEYVAQAIDPSLSWDDITWLRRLTSLPIVVKGILRGDDAKEAVKHG 251          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 7.334e-62
Identity = 131/248 (52.82%), Postives = 161/248 (64.92%), Query Frame = 2
Query:   38 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSS-TGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 778
            +    +V E    AK  LPKM YDYYASG+ DQ TL EN NAFSRI   PR L DVSK++  T + G +IS PI+IAP A Q+MA   GE           TIMTLSS +T+SVE++SS T     +FQLYV K R V  +LVKRAE  G+ A+ LTVDTP LG+R AD KN F LP  L+LK +E L +  +    D GL  Y+A  ID SL W D+KWL++IT LPILVKG++  +DA LA+QYGA
Sbjct:   28 LDSFVSVSELHEEAKRLLPKMAYDYYASGSNDQITLAENENAFSRIKLVPRSLVDVSKVNTKTRIFGRDISTPILIAPWAMQRMASQRGELDTVEASKEFNTIMTLSSLSTTSVEDLSSATNGNPGWFQLYVFKDRKVSEELVKRAESIGYSALVLTVDTPFLGKRTADFKNSFKLPNGLSLKIFEKLMLSNL----DGGLNQYIATMIDPSLTWNDLKWLKSITKLPILVKGIMCPKDAELALQYGA 271          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.064e-44
Identity = 93/238 (39.08%), Postives = 144/238 (60.50%), Query Frame = 2
Query:   62 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQY 772
            ++   A+E L K  +D+   GA+D  T  EN  AF +I  RPR L+DVSK+DM TT+ G  IS PI IAPT F ++A P+GE                S++A+ S+E++ +  P G+R+FQLYV  +R ++ Q++++ E  GFKA+ +TVD P++G R  DI N+  L   L LK+     +G +       +  +  + ID S+ W+D+ W Q++T LPI++KG+LT EDA LA+++
Sbjct:    8 DFREHAREHLSKSTWDFIEGGADDCCTRDENMAAFKKIRLRPRYLKDVSKVDMRTTIQGAEISAPICIAPTGFHRLAWPDGEMSTARAAQAASICYITSTYASCSLEDIVAAAPRGLRWFQLYVHPNRQINKQMIQKVESLGFKALVITVDVPKVGNRRNDITNQVDLMKKLLLKDLGSPEMGNV-------MPYFQMSPIDPSICWEDLSWFQSMTRLPIILKGILTKEDAELAVKH 238          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.878e-41
Identity = 95/238 (39.92%), Postives = 139/238 (58.40%), Query Frame = 2
Query:   62 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQY 772
            +++A A+E+L K   D+   GA+D  T  +N  AF RI  RPR LRDVS++D  TT+ G  IS PI IAPT F  +  P+GE          G     S++A+ S+E++    P G+R+FQLYV     ++ QL++R E  GFKA+ +T+DTP  G R  DI+N+  L  +LTL + +    G       + +  +    I  SL W D+ W Q+IT LPI++KG+LT EDA LA+++
Sbjct:    8 DFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDTRTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAAPEGLRWFQLYVHPDLQLNKQLIQRVESLGFKALVITLDTPVCGNRRHDIRNQ--LRRNLTLTDLQSPKKG-------NAIPYFQMTPISTSLCWNDLSWFQSITRLPIILKGILTKEDAELAVKH 236          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 9.320e-41
Identity = 96/238 (40.34%), Postives = 142/238 (59.66%), Query Frame = 2
Query:   62 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQY 772
            +++A A+++L K  +D+    A+D  T  EN  AF RI  RPR LRD+SK+D  TT+ G  IS PI I+PTAF  +A P+GE               +SS+A+ S+E++ +  P G R+FQLY+    + + Q+V+RAE  GFKA+ +T+DTP LG R  D +N+  L  ++ LK+   L   K +K   S   S+       S  W D+  LQ+IT LPI++KG+LT EDA LA+++
Sbjct:    8 DFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRAL---KEEKPTQSVPVSFP----KASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKH 238          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: CYB2_HANAN (Cytochrome b2, mitochondrial OS=Hansenula anomala GN=CYB2 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.346e-39
Identity = 90/249 (36.14%), Postives = 144/249 (57.83%), Query Frame = 2
Query:   38 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTG-PG-IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDS-GLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYG 775
            +S++ N+ ++E +A++ LP     YY S A+D+ TL+EN NA+ RI F P+IL DV  +D++T   G   S P  I+ TA  K+ HPEGE            +  +S+ A+ S +E++    PG  +++QLYV   R++  + V+ AE  G K + +TVD P LGRRE D+K +F     +          G  +  D S G +  +++ ID SL+WKD+ ++++IT +PI++KGV   ED  LA ++G
Sbjct:  184 LSQMINLHDFETIARQILPPPALAYYCSAADDEVTLRENHNAYHRIFFNPKILIDVKDVDISTEFFGEKTSAPFYISATALAKLGHPEGEVAIAKGAGREDVVQMISTLASCSFDEIADARIPGQQQWYQLYVNADRSITEKAVRHAEERGMKGLFITVDAPSLGRREKDMKMKFEADSDVQ---------GDDEDIDRSQGASRALSSFIDPSLSWKDIAFIKSITKMPIVIKGVQRKEDVLLAAEHG 423          
The following BLAST results are available for this feature:
BLAST of CB290499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
GOX_SPIOL1.557e-11283.67Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
GOX2_ARATH5.009e-11182.04Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH3.589e-10980.00Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
HAOX1_HUMAN5.079e-6350.41Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX1_MOUSE1.930e-6251.23Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX_DICDI7.334e-6252.82Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
HAOX2_BOVIN1.064e-4439.08Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
HAOX2_HUMAN1.878e-4139.92Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
HAOX2_RAT9.320e-4140.34Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]
CYB2_HANAN1.346e-3936.14Cytochrome b2, mitochondrial OS=Hansenula anomala ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bh04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bh04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290499 ID=CB290499; Name=CB290499; organism=Citrus sinensis; type=EST; length=780bp
GCCCGAGGGGAAGCCAAGCGATAGCATTATGACTTATATATCCGAGATCA
CCAATGTTATGGAGTATGAGGCTCTTGCAAAGGAGAAATTGCCGAAGATG
GTTTATGACTACTATGCATCAGGTGCTGAGGACCAGTGGACTCTTCAGGA
AAACCGTAATGCATTCTCTAGGATTCTATTTCGACCACGCATTCTTAGAG
ATGTAAGCAAGATTGACATGACTACAACAGTCTTGGGCTTCAACATTTCC
ATGCCCATCATGATTGCTCCAACGGCATTTCAGAAAATGGCTCATCCTGA
AGGGGAGTGTGCAACAGCAAGGGCAGCCTCAGCAGCTGGCACAATCATGA
CATTATCTTCATGGGCCACTTCCAGTGTCGAGGAAGTTTCTTCAACGGGA
CCTGGAATTCGCTTTTTCCAACTCTATGTGACCAAGCACAGGAATGTGGA
CGCACAGCTAGTAAAAAGAGCTGAAAGGGCTGGTTTTAAGGCGATTGCCC
TTACCGTCGATACTCCAAGGCTTGGCCGTCGGGAAGCTGATATTAAGAAC
AGATTTGTTTTGCCGCCACATCTGACTTTGAAGAACTATGAGGGCTTGTA
TATTGGCAAGATGGATAAGACTGATGACTCTGGATTAGCTTCGTATGTTG
CCAACCAAATTGACCGGTCACTGAACTGGAAGGATGTGAAGTGGCTTCAA
ACAATCACCTCACTGCCAATACTCGTGAAGGGTGTTCTTACTGCTGAAGA
TGCAAGTCTAGCAATACAATATGGAGCTGC
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