CB290512

Overview
NameCB290512
Unique NameCB290512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig136 contig Csv1_Contig136:255..1037. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290512 vs. ExPASy Swiss-Prot
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.149e-61
Identity = 120/155 (77.42%), Postives = 135/155 (87.10%), Query Frame = -2
Query:  318 SGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQNAQYALQGPLNYVNPQAQGQHMIVP 782
            SGG+QSP +  VREQDR+LPIANISRIMK+ LPANGKIAKDAK+ VQECVSEFISF+TSEASDKCQ+EKRKTINGDDLLWAMATLGFEDY++PLK YLMRYREMEGDTKGSA+GGD +AK+D   +  GQ +Q A QGP  Y N QAQ QHM+VP
Sbjct:   17 SGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGGDPNAKKDGQSSQNGQFSQLAHQGP--YGNSQAQ-QHMMVP 168          
BLAST of CB290512 vs. ExPASy Swiss-Prot
Match: NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.449e-58
Identity = 117/164 (71.34%), Postives = 133/164 (81.10%), Query Frame = -2
Query:  300 SGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQNAQYALQGPLN---YVNPQAQGQHMIVPSMQGNE 782
            SGG+QSP +  VREQDR+LPIANISRIMK+ LP NGKIAKDAK+T+QECVSEFISF+TSEASDKCQ+EKRKTINGDDLLWAMATLGFEDYIDPLK YLMRYREMEGDTKGS +GG+ SAKRD   +   Q +Q   QG  +   Y N  +QG +M+V  M G E
Sbjct:   16 SGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGKGGESSAKRDGQPSQVSQFSQVPQQGSFSQGPYGN--SQGSNMMV-QMPGTE 176          
BLAST of CB290512 vs. ExPASy Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 6.695e-55
Identity = 107/152 (70.39%), Postives = 121/152 (79.61%), Query Frame = -2
Query:  345 GGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIG-------ALPGQNAQYALQGPLNYVNPQ 779
            GG      GGVREQDR+LPIANISRIMKKA+PANGKIAKDAK+TVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMATLGFEDYI+PLK YL +YREMEGD+K +A+ GDGS K+D +G       +  G   Q A    + Y+ PQ
Sbjct:   26 GGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGSVKKDVLGSHGGSSSSAQGMGQQAAYNQGMGYMQPQ 177          
BLAST of CB290512 vs. ExPASy Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.154e-53
Identity = 107/152 (70.39%), Postives = 120/152 (78.95%), Query Frame = -2
Query:  345 SPHAGG----VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIG-------ALPGQNAQYALQGPLNYVNPQ 767
            SP  GG    VREQDR+LPIANISRIMKKA+PANGKIAKDAK+TVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAMATLGFEDYI+PLK YL +YREMEGD+K +A+  DGS K+D +G       A  G   Q A    + Y+ PQ
Sbjct:   19 SPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSIKKDALGHVGASSSAAEGMGQQGAYNQGMGYMQPQ 170          
BLAST of CB290512 vs. ExPASy Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.823e-52
Identity = 101/128 (78.91%), Postives = 109/128 (85.16%), Query Frame = -2
Query:  393 GEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQ 776
            G+     G VREQDRYLPIANISRIMKKALP NGKI KDAKDTVQECVSEFISFITSEASDKCQKEKRKT+NGDDLLWAMATLGFEDY++PLK YL RYRE+EGD KGS + GDGS  RD  G + G+
Sbjct:   10 GDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGS-NRDAGGGVSGE 136          
BLAST of CB290512 vs. ExPASy Swiss-Prot
Match: NFYB2_ORYSJ (Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp. japonica GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.543e-51
Identity = 102/147 (69.39%), Postives = 122/147 (82.99%), Query Frame = -2
Query:  345 PHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQNAQYA-------LQGPLNYVNPQ 764
            P +GGVREQDR+LPIANISRIMKKA+PANGKIAKDAK+T+QECVSEFISF+TSEASDKCQKEKRKTING+DLL+AM TLGFE+Y+DPLK YL +YRE+ GD+K S++ GDGS K+DTIG   G ++  A        QG + Y+ PQ
Sbjct:   27 PRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGDSKLSSKAGDGSVKKDTIGPHSGASSSSAQGMVGAYTQG-MGYMQPQ 172          
BLAST of CB290512 vs. ExPASy Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.399e-44
Identity = 87/117 (74.36%), Postives = 101/117 (86.32%), Query Frame = -2
Query:  408 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSAR---GGD-GSAKRDTIG 746
            REQDR+LPIAN+SRIMKKALPAN KI+KDAK+T+QECVSEFISF+T EASDKCQKEKRKTINGDDLLWAM TLGFEDY++PLK YL R+RE+EG+  G  R   GG+ G  +RD +G
Sbjct:   26 REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQTGGEVGEHQRDAVG 142          
BLAST of CB290512 vs. ExPASy Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.827e-44
Identity = 87/117 (74.36%), Postives = 99/117 (84.62%), Query Frame = -2
Query:  435 SGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGD-TKGSARGGD 782
            SGG +       REQDR+LPIAN+SRIMKKALPAN KI+KDAK+TVQECVSEFISFIT EASDKCQ+EKRKTINGDDLLWAM TLGFEDY++PLK YL +YRE+EG+ T  + R GD
Sbjct:    8 SGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124          
BLAST of CB290512 vs. ExPASy Swiss-Prot
Match: NFYB4_ORYSJ (Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp. japonica GN=NFYB4 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 7.678e-43
Identity = 85/116 (73.28%), Postives = 100/116 (86.21%), Query Frame = -2
Query:  411 GGV-REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTI 755
            GGV +EQDR+LPIANI RIM++A+P NGKIAKD+K++VQECVSEFISFITSEASDKC KEKRKTINGDDL+W+M TLGFEDY++PLK YL  YRE EGDTKGS R  +   K+D +
Sbjct:   17 GGVGKEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKTINGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKGS-RASELPVKKDVV 131          
BLAST of CB290512 vs. ExPASy Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.038e-39
Identity = 78/129 (60.47%), Postives = 96/129 (74.42%), Query Frame = -2
Query:  360 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQNAQYALQGPLN 746
            +EQDR+LPIAN+ RIMKK LP NGKI+KDAK+TVQECVSEFISF+T EASDKCQ+EKRKTINGDD++WA+ TLGFEDY+ PLK YL +YR+ EG+   S +      ++  I      N Q+  Q   N
Sbjct:   35 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQQQQRQQQQQIQQQNHHNYQFQEQDQNN 163          
The following BLAST results are available for this feature:
BLAST of CB290512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
NFYB8_ARATH2.149e-6177.42Nuclear transcription factor Y subunit B-8 OS=Arab... [more]
NFYBA_ARATH8.449e-5871.34Nuclear transcription factor Y subunit B-10 OS=Ara... [more]
NFYB3_ORYSJ6.695e-5570.39Nuclear transcription factor Y subunit B-3 OS=Oryz... [more]
NFYB_MAIZE2.154e-5370.39Nuclear transcription factor Y subunit B OS=Zea ma... [more]
NFYB1_ARATH1.823e-5278.91Nuclear transcription factor Y subunit B-1 OS=Arab... [more]
NFYB2_ORYSJ1.543e-5169.39Nuclear transcription factor Y subunit B-2 OS=Oryz... [more]
NFYB2_ARATH1.399e-4474.36Nuclear transcription factor Y subunit B-2 OS=Arab... [more]
NFYB3_ARATH1.827e-4474.36Nuclear transcription factor Y subunit B-3 OS=Arab... [more]
NFYB4_ORYSJ7.678e-4373.28Nuclear transcription factor Y subunit B-4 OS=Oryz... [more]
NFYB7_ARATH1.038e-3960.47Nuclear transcription factor Y subunit B-7 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bh12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bh12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290512 ID=CB290512; Name=CB290512; organism=Citrus sinensis; type=EST; length=783bp
TTTTTTTTTTTTTGTTCATGCAATCATCTATTAAATAAAGACCCTAATTT
ACAGCACTAATCATCGGACTACCACAGTTGTTTTGTTGATAAGGGCACGT
AAAAGACAAAGTGAAGGGAAAAAAATCCGAACCACCATCACCCTCAACAA
CAAACATAAAAGGAAAAAAATCTGAAAAAATATAGAACTTCAGATCAAGC
AGATAAGTTAATATCAAAGATGCTATAGGTGTTGAAACTAAACAATTTGA
GCAACCCTAAAATCATAAAATATGTGACAGTGAAGCTAGAAACCACTTAT
TCATTTCCCTGCATGGATGGAACGATCATATGCTGCCCCTGTGCTTGGGG
ATTAACATAGTTGAGTGGACCCTGAAGAGCATACTGTGCATTTTGGCCAG
GCAGAGCTCCGATCGTGTCCCTTTTAGCAGATCCATCCCCACCCCTAGCA
GATCCTTTGGTGTCACCCTCCATCTCCCTGTACCTCATAAGGTATGCCTT
AAGAGGATCAATATAATCTTCAAAACCCAGAGTTGCCATTGCCCAGAGCA
AATCATCCCCATTAATTGTCTTCCTCTTCTCCTTCTGACACTTATCACTC
GCCTCGCTGGTAATGAAGCTGATGAACTCAGAGACACATTCCTGTACAGT
ATCCTTAGCATCCTTAGCGATCTTGCCATTAGCAGGCAAAGCCTTCTTCA
TGATCCTGCTAATGTTAGCTATTGGCAAATACCTGTCCTGCTCTCTCACT
CCCCCAGCGTGCGGGCTCTGCTCTCCCCCGCTC
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