CB290551

Overview
NameCB290551
Unique NameCB290551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12709 contig Csv1_Contig12709:18..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 7.200e-36
Identity = 78/151 (51.66%), Postives = 100/151 (66.23%), Query Frame = 2
Query:  368 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVL---DGLPNGPV-NVTCNSWLHSK----HDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL 796
            VS+ELD KTG +K+T++ YA  +  D    + YE++F+VPSGFG IGAI+V NE  +EM+L+DI L   DG  N  V  + CNSW+  K         KR+FF NK YLP QTP GL+ YR  +L   RG+G GER+  DR+YDYDVYNDL
Sbjct:  119 VSSELDAKTGKEKATVRSYAHNVDDDDHSVVTYEADFDVPSGFGPIGAIIVTNELRQEMFLEDINLTASDGAGNSTVLPIRCNSWVQPKSVGDEGTPSKRIFFANKTYLPGQTPAGLRSYRKNDLQQKRGDGTGEREADDRVYDYDVYNDL 269          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.961e-35
Identity = 71/147 (48.30%), Postives = 100/147 (68.03%), Query Frame = 2
Query:  368 VSAELDPKTGLDKST----IQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL 796
            +S ++DPKT   K +    ++D+++K  +  +  + Y +EF V S FG  GAI V N+H KE +L+ I ++G   GPV+  CNSW+ S+ D+  KR+ FTN+ YLPS+TP GL+  R +EL  LRGNG+GERK  DRIYDYDVYND+
Sbjct:  130 MSTQVDPKTNEPKKSKAAVLKDWSKKSNSKAE-RVHYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPSKRILFTNQPYLPSETPSGLRTLREKELENLRGNGKGERKLSDRIYDYDVYNDI 275          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.316e-34
Identity = 71/145 (48.97%), Postives = 98/145 (67.59%), Query Frame = 2
Query:  368 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVL--DGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL 796
            VS+ELDPKTG ++  ++ +A     +G     YE++  VP+ FG +GA+LVENEHH+EM++KDI L   G  +  +     SW+HSK D+ + R FFT K YLPSQTP G++  R +EL  LRG+G  ERK ++R+YDYD YNDL
Sbjct:  106 VSSELDPKTGRERERVKGFAHMTLKEGT----YEAKMSVPASFGPVGAVLVENEHHREMFIKDIKLITGGDESTAITFDVASWVHSKFDDPEPRAFFTVKSYLPSQTPPGIEALRKKELETLRGDGHSERKFHERVYDYDTYNDL 246          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.802e-34
Identity = 76/151 (50.33%), Postives = 101/151 (66.89%), Query Frame = 2
Query:  368 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVL---DGLPNGPV-NVTCNSWLHSKHDNKQ----KRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL 796
            VS+EL+ KTG  K+T+  YA K+  D  G + YE++F+VP+GFG IGA++V NE  +EM+L+D+ L   DG  N  V  + CNSW+  K    +    KR+FF  K YLP QTP GL+ YR E+L   RGNG G+R+  DR+YDYDVYNDL
Sbjct:  137 VSSELEAKTGKKKATVHSYAHKVDDDDHGVVTYEADFDVPTGFGPIGAVVVTNELGQEMFLEDLNLTAGDGAGNSTVLPIRCNSWVQPKSSIDEGTPGKRIFFA-KAYLPGQTPAGLRSYREEDLKQKRGNGAGQREADDRVYDYDVYNDL 286          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.501e-33
Identity = 70/147 (47.62%), Postives = 99/147 (67.35%), Query Frame = 2
Query:  368 VSAELDPKTGLDKST----IQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL 796
            +S +LDPKT L K +    ++D+++K     +  + Y +EF V + FG  GAI V N+H KE +L+ I ++G   GPV+  CNSW+ S+ D+  KR+FFTN+ YLP++TP GL+  R +EL  LRG+G G RK  DRIYD+DVYNDL
Sbjct:  124 ISTQLDPKTKLPKKSNAAVLKDWSKKSKTKAE-RVHYTAEFTVDAAFGSPGAITVMNKHQKEFFLESITIEGFALGPVHFPCNSWVQSQKDHPDKRIFFTNQPYLPNETPSGLRVLREKELKNLRGDGSGVRKLSDRIYDFDVYNDL 269          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 7.451e-33
Identity = 69/147 (46.94%), Postives = 94/147 (63.95%), Query Frame = 2
Query:  368 VSAELDPKTGLDK----STIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL 796
            VS E DP+ G  K    S +  +  K     +  + Y +EF V +GFGE GA+ V N H +E Y++ IV++G P GP + TCNSW+     ++ +RVFF+N+ YLPS+TP GL+  R  EL  LRG+G GER+  DR+YDYDVYNDL
Sbjct:  106 VSTETDPRKGTPKKSKPSALVGWFDKKDVKAE-RVVYTAEFAVDAGFGEPGAVTVLNRHQREFYIESIVVEGFPTGPAHFTCNSWVQPTRVSRDRRVFFSNRPYLPSETPPGLRELRLRELADLRGDGTGERRITDRVYDYDVYNDL 251          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.698e-32
Identity = 73/149 (48.99%), Postives = 100/149 (67.11%), Query Frame = 2
Query:  368 VSAELDPKTGLD----KSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDG--LPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL 796
            +S ++ P+T       + +I+D+ +K GA GD ++ Y +EF V + FGE GAI V N H++E +L+ IV++G  LP GPV+  CNSW+ S  +   KRVFF+NK YLPS+TP GL+  R +EL  LRG+G G RK  DRIYDY  YNDL
Sbjct:  118 ISTKIHPRTKKPMQSGRVSIKDWCQKRGAKGD-HVVYTAEFTVDADFGEPGAIAVANRHNREFFLESIVVEGGGLPCGPVHFACNSWVQSTRELPTKRVFFSNKPYLPSETPPGLRELREKELKDLRGDGTGVRKLSDRIYDYATYNDL 265          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.308e-32
Identity = 73/145 (50.34%), Postives = 87/145 (60.00%), Query Frame = 2
Query:  368 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVL--DGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL 796
            VS+ELDP+TG ++  I    +  G   D    YE+ F+VP+ FG IGA+ V N HH EM L DI +   G     V   C SW+   H    KRVFF    YLPSQTP G++  R  EL ILRG G GERK +DRIYDYDVYNDL
Sbjct:  120 VSSELDPQTGQEREPISGAVKHSGRVDDEWDMYEATFKVPASFGPIGAVQVTNYHHSEMLLGDIEVFPTGQEESAVTFHCKSWIDPSHCTPDKRVFFPAHSYLPSQTPKGVEGLRKRELEILRGTGCGERKEHDRIYDYDVYNDL 264          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.029e-30
Identity = 65/146 (44.52%), Postives = 99/146 (67.81%), Query Frame = 2
Query:  368 VSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQ---GERKTYDRIYDYDVYNDL 796
            +SA+ D +      T++DYA+++ A+     +YE EFE+P  FG +GAI ++N++H++++LK + L  LP G +  TC SW+  K  +  KR+FF++K YLPSQTP+ LK+YR EEL  L+G  +   GE   ++RIYDYDVYND+
Sbjct:  111 ISAKTDQRI-----TVEDYAQRVWAEAPDE-KYECEFEMPEDFGPVGAIKIQNQYHRQLFLKGVELK-LPGGSITFTCESWVAPKSVDPTKRIFFSDKSYLPSQTPEPLKKYRKEELETLQGKNREEVGEFTKFERIYDYDVYNDV 249          
BLAST of CB290551 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.231e-28
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 2
Query:  446 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL 796
            G G   Y+  FE  S FG  GA  ++N    E YLK ++L+ +PN G ++  CNSW+++  + K  R+FF N  YLPS+TP  L +YR EEL  +RG+G GERK +DRIYDYDVYNDL
Sbjct:   89 GAGEQAYDVNFEWDSDFGIPGAFYIKNFMQNEFYLKSLILEDIPNHGTIHFVCNSWVYNSKNYKTDRIFFANNTYLPSETPAPLLKYREEELKNVRGDGTGERKEWDRIYDYDVYNDL 206          
The following BLAST results are available for this feature:
BLAST of CB290551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOXC1_ORYSJ7.200e-3651.66Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX4_ARATH7.961e-3548.30Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX23_HORVU2.316e-3448.97Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXC2_ORYSJ8.802e-3450.33Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX3_ARATH1.501e-3347.62Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ7.451e-3346.94Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ3.698e-3248.99Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX21_HORVU6.308e-3250.34Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX2_ARATH2.029e-3044.52Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX4_SOYBN4.231e-2850.00Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290551 ID=CB290551; Name=CB290551; organism=Citrus sinensis; type=EST; length=797bp
GCACTAGGAAATTCTAAAGCATCTTCTTCTTACTTGAAAAACAATGTTGA
AGCCACAGGTTCATCAACCTCAATCTATCAAACCCCTATTTCCATTATCC
AAGCCGTTTCTCCATGGAAATTACGGCCATGCCTTTCGTCCAGTTCAATC
AACTTCTACACTTTTTAAAGGAAGTCCCAAACTTCGGATTGGTTCTGTTC
CCAGAAACACTATCAAAGCTATAGCAACTTCCACTGAAAAATCAATCAAA
GTTAAGGCTGTTGTTACTGTGAAACCAACTGTGGGAGGCTTCCTCTCAAA
TATTTCTTTAGACCAAGGGTTAGATGATCTTGGAGATTTGTTTGGTAAAT
CACTCCTCTTGGAGCTTGTCAGTGCTGAGCTTGACCCCAAGACGGGATTG
GATAAATCCACCATCCAAGATTATGCGCGCAAAATTGGTGCGGACGGGGA
TGGAAACATGCAATATGAATCAGAATTCGAAGTCCCATCTGGATTTGGAG
AAATTGGCGCAATATTAGTGGAAAATGAGCACCACAAAGAGATGTATTTG
AAAGATATTGTTCTTGATGGTTTGCCAAATGGTCCTGTCAACGTAACATG
TAATTCATGGCTTCACTCAAAGCACGACAATAAACAAAAGAGAGTTTTCT
TTACCAACAAGTTGTACTTGCCATCACAAACACCAGACGGATTGAAGAGA
TATAGAGCTGAGGAGCTTACCATTTTGCGAGGTAATGGACAAGGAGAGCG
CAAAACCTATGATAGAATCTATGATTATGATGTCTACAATGATCTTG
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