CB290617

Overview
NameCB290617
Unique NameCB290617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290617_ssr223 microsatellite CB290617_ssr223:223..237. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:35..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290617 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.862e-50
Identity = 111/177 (62.71%), Postives = 130/177 (73.45%), Query Frame = 3
Query:  132 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFIGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSYGGVAWFLGTIVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 638
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AF GPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGT VLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CB290617 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.219e-36
Identity = 90/198 (45.45%), Postives = 124/198 (62.63%), Query Frame = 3
Query:   63 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFIGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSYGGVAWFLGTIVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 638
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+  GGV WFL T  +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CB290617 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.971e-32
Identity = 85/189 (44.97%), Postives = 111/189 (58.73%), Query Frame = 3
Query:   75 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFIGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSYG-GVAWFLGTIVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 638
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AF GPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T+ +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CB290617 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.019e-31
Identity = 74/131 (56.49%), Postives = 91/131 (69.47%), Query Frame = 3
Query:  252 PTIPKAEPQPPKKPRMSTGFSEVFAFIGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSY--GGVAWFLGTIVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 638
            PT   A P+P  K + +    +  AF GPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T  + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CB290617 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.330e-31
Identity = 67/117 (57.26%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  279 PPKKPRMSTGFSEVFAFIGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSYG-GVAWFLGTIVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 626
            PP KP+ ST   +  AF GPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T+ +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of CB290617 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.086e-17
Identity = 59/128 (46.09%), Postives = 71/128 (55.47%), Query Frame = 3
Query:  255 TIPKAEPQPPKKPRMSTG--FSEVFAFIGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSYGGVAWFLGTIVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVALAFTEFVKG 626
            T P + P PP  P        +EV  F G APE INGRLAM+GFVAALG E+S G+ V  QL        L T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of CB290617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA4.862e-5062.71Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL5.219e-3645.45Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI9_HORVU5.971e-3244.97Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU1.019e-3156.49High molecular mass early light-inducible protein ... [more]
ELI6_HORVU1.330e-3157.26Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA7.086e-1746.09Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ce11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ce11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290617 ID=CB290617; Name=CB290617; organism=Citrus sinensis; type=EST; length=774bp
GCACTAGGAGCACCCAATTCCCGAATTATACTTTGTTCTGTTTTCTACTT
CATAAATTAAAAATGGCCGCATCACTTGCTACTCAATCTATGCTGGCAAG
TCCTGTAGCAGCTCGTGTGACTGGTATCAGGAGATCCGGGGCAAACCAAC
TTTCCTCCGTCAAGTACTTGCCTAGTCTGCGTAGAAATGTCAACTTATCC
GTGCGCTGCACGGCAGAGGATGAGCAGCAGCAGCAGCAAAAAGATGATCA
ACCAACCATACCGAAAGCTGAGCCTCAACCACCAAAGAAGCCGCGGATGA
GCACGGGGTTCTCTGAGGTGTTTGCGTTCATCGGGCCGGCACCGGAGAGG
ATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTGCATTGGGGGTGGA
GATATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCATACGGTGGGGTTG
CCTGGTTCTTGGGGACCATTGTTTTGCTCACGGTTGCGTCCCTGGTTCCT
TTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATGGGTTCATGACTTC
GGATGCTGAGTTGTGGAATGGGAGGTTTGCTATGCTGGGCCTTGTTGCTT
TGGCTTTCACCGAGTTTGTTAAGGGTGGCACCCTTGTTTAAGCTTAATTT
TGTTTAGATCTGTAGATCTGTATTTTTTTTAACTAATTAATGTATGAGAT
CCTACTGTAATTAGATCTCTATTTCTCATGCCATTCTGTAATTCAACCAC
CATTTTCTAAAAAAAAAAAAAAAA
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