CB290624

Overview
NameCB290624
Unique NameCB290624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 378.252 bits (970), Expect = 3.019e-104
Identity = 183/217 (84.33%), Postives = 194/217 (89.40%), Query Frame = 1
Query:  193 EGQNSNSTTSGV-KRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            EGQ SNST S   +R  DPE ALY ELWHACAGPLVTVPR+ +RV+YFPQGHIEQVEASTNQ A+QQMP+YDLPSK+LCRVINV LKAE DTDEV+AQ+TLLPE+NQDENA+EKE       RF VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQEL AKDLH NEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR
Sbjct:   36 EGQKSNSTRSAAAERALDPEAALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVINVDLKAEADTDEVYAQITLLPEANQDENAIEKEAPLPPPPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 252          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 327.02 bits (837), Expect = 7.981e-89
Identity = 163/206 (79.13%), Postives = 178/206 (86.41%), Query Frame = 1
Query:  238 GDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDEN--AVEKEXXXXXXX---RFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            G  E AL+TELW ACAGPLVTVPR GE+V+YFPQGHIEQVEASTNQV +Q+M +Y+LP KILC V+NV+LKAEPDTDEV+AQ+TLLPES Q E+  + E+E          R  VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQEL AKDLHG EWRFRHIFRGQPRRHLLQSGWSVFVS+KRLVAGDAFIFLR
Sbjct:   32 GGGEDALFTELWSACAGPLVTVPRVGEKVFYFPQGHIEQVEASTNQVGEQRMQLYNLPWKILCEVMNVELKAEPDTDEVYAQLTLLPESKQQEDNGSTEEEVPSAPAAGHVRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLR 237          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.961e-88
Identity = 162/206 (78.64%), Postives = 177/206 (85.92%), Query Frame = 1
Query:  238 GDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDEN--AVEKEXXXXXXX---RFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            G  E AL+TELW ACAGPLVTVPR GE+V+YFPQGHIEQVEASTNQV +Q+M +Y+LP KILC V+NV+LKAEPDTDEV+AQ+TLLPE  Q E+  + E+E          R  VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQEL AKDLHG EWRFRHIFRGQPRRHLLQSGWSVFVS+KRLVAGDAFIFLR
Sbjct:   32 GGGEDALFTELWSACAGPLVTVPRVGEKVFYFPQGHIEQVEASTNQVGEQRMQLYNLPWKILCEVMNVELKAEPDTDEVYAQLTLLPELKQQEDNGSTEEEVPSAPAAGHVRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLR 237          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 5.720e-87
Identity = 159/203 (78.33%), Postives = 172/203 (84.73%), Query Frame = 1
Query:  238 GDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFH--VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            GDP   LY ELWHACAGPLVTVPR G+ V+YFPQGHIEQVEAS NQVAD QM +YDLPSK+LCRV+NV+LKAE DTDEV+AQV L+PE  Q+E AVEK        +    V SFCKTLTASDTSTHGGFSVLRRHADECLPPLDM++ PPTQEL AKDLH  +WRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR
Sbjct:   18 GDP---LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVADSQMRLYDLPSKLLCRVLNVELKAEQDTDEVYAQVMLMPEPEQNEMAVEKTTPTSGPVQARPPVRSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTQSPPTQELVAKDLHSMDWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 217          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 4.532e-84
Identity = 164/231 (71.00%), Postives = 178/231 (77.06%), Query Frame = 1
Query:  187 PMEGQNSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQ-MPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENA----------VEKEXXXXXXX--RFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            P+EG      T G    G     L+ ELW ACAGPLVTVP  GERV+Y PQGHIEQVEASTNQVA+QQ  P+Y+LP KI C+V+NV+LKAEPDTDEV+AQ+TLLPE  QD N           VE+E         R  VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMS+ PPTQEL AKDLHG EWRFRHIFRGQPRRHLLQSGWSVFVS+KRLVAGDAFIFLR
Sbjct:   11 PVEG-----LTGGGGGGGGGVDGLFVELWRACAGPLVTVPAVGERVFYLPQGHIEQVEASTNQVAEQQGAPLYNLPWKIPCKVMNVELKAEPDTDEVYAQLTLLPEKQQDGNGSGNGNVSKDKVEEEEVVPPAATERPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQHPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLR 236          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 5.011e-83
Identity = 145/196 (73.98%), Postives = 170/196 (86.73%), Query Frame = 1
Query:  253 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            ALY ELWHACAGPLVTVPR+GE VYYFPQGH+EQ+EAST+Q  DQ +P+++LPSKILC+V+NV+L+AE D+DEV+AQ+ L PE++Q+E    K        + +VHSFCKTLTASDTSTHGGFSVLRRHA+ECLPPLDM++ PP QEL A+DLHGNEW FRHIFRGQPRRHLL +GWSVFVSSKRLVAGDAFIFLR
Sbjct:   22 ALYRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFNLPSKILCKVVNVELRAETDSDEVYAQIMLQPEADQNELTSPKPEPHEPE-KCNVHSFCKTLTASDTSTHGGFSVLRRHAEECLPPLDMTQNPPWQELVARDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLR 216          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 4.242e-82
Identity = 145/196 (73.98%), Postives = 167/196 (85.20%), Query Frame = 1
Query:  253 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            AL  ELWHACAGPLVT+PREGERVYYFP+GH+EQ+EAS +Q  +QQMP ++LPSKILC+VIN+Q +AEP+TDEV+AQ+TLLPE +Q E     +       +  VHSFCKTLTASDTSTHGGFSVLRRHAD+CLPPLDMS+QPP QEL A DLH +EW FRHIFRGQPRRHLL +GWSVFVSSK+LVAGDAFIFLR
Sbjct:   18 ALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCKVINIQRRAEPETDEVYAQITLLPELDQSE-PTSPDAPVQEPEKCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLR 212          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 3.591e-81
Identity = 143/196 (72.96%), Postives = 164/196 (83.67%), Query Frame = 1
Query:  253 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            AL+ ELWHACAGPLVTVP+ GERVYYFPQGH+EQ+EASTNQ  DQ +P+++LPSKILC V+NV+L+AE D+DEV+AQ+ L PE++Q E     +       +   HSFCKTLTASDTSTHGGFSVLRRHA+ECLP LDMS+ PP QEL AKDLHG EW FRHIFRGQPRRHLL +GWSVFVSSKRLVAGDAFIFLR
Sbjct:   20 ALFRELWHACAGPLVTVPKRGERVYYFPQGHMEQLEASTNQQLDQYLPMFNLPSKILCSVVNVELRAEADSDEVYAQIMLQPEADQSE-LTSLDPELQDLEKCTAHSFCKTLTASDTSTHGGFSVLRRHAEECLPQLDMSQNPPCQELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLR 214          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3)

HSP 1 Score: 277.33 bits (708), Expect = 7.252e-74
Identity = 137/203 (67.49%), Postives = 162/203 (79.80%), Query Frame = 1
Query:  235 VGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQ-VADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            +G  +  LYTELW ACAGPLV VPR GERV+YFPQGH+EQ+ ASTNQ V DQ++PV++LP KILCRV++V LKAE +TDEV+AQ+TL PE +Q E     +       +  V SF K LTASDTSTHGGFSVLR+HA ECLP LDM++  PTQEL A+DLHG EWRF+HIFRGQPRRHLL +GWS FV+SKRLVAGDAF+FLR
Sbjct:   32 LGSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPKILCRVLSVTLKAEHETDEVYAQITLQPEEDQSE-PTSLDPPLVEPAKPTVDSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLR 233          
BLAST of CB290624 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 5.197e-72
Identity = 132/196 (67.35%), Postives = 155/196 (79.08%), Query Frame = 1
Query:  256 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQ-VADQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR 840
            LYTELW  CAGPLV VPR  ERV+YFPQGH+EQ+ ASTNQ +  +++PV+DLP KILCRV++V LKAE +TDEV+AQ+TL PE +Q E     +       +   HSF K LTASDTSTHGGFSVLR+HA ECLP LDM++  PTQEL  +DLHG EWRF+HIFRGQPRRHLL +GWS FVSSKRLVAGDAF+FLR
Sbjct:   22 LYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILCRVLDVTLKAEHETDEVYAQITLQPEEDQSE-PTSLDPPIVGPTKQEFHSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDAFVFLR 216          
The following BLAST results are available for this feature:
BLAST of CB290624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
ARFB_ARATH3.019e-10484.33Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFW_ORYSJ7.981e-8979.13Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI3.961e-8878.64Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFD_ORYSJ5.720e-8778.33Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFX_ORYSJ4.532e-8471.00Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFG_ORYSJ5.011e-8373.98Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]
ARFA_ARATH4.242e-8273.98Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFI_ORYSJ3.591e-8172.96Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]
ARFK_ARATH7.252e-7467.49Auxin response factor 11 OS=Arabidopsis thaliana G... [more]
ARFR_ARATH5.197e-7267.35Auxin response factor 18 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cf04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290624 ID=CB290624; Name=CB290624; organism=Citrus sinensis; type=EST; length=840bp
GAGAGGGAGGGAAATTGTCTCTGCGTTTAGAGGTTCGCGTGTTGTCGTTT
TGAGCGTTAGCAGATGAGAGATCTGAGCTTGAAAGGGACTTGAATTGGGA
AAAGAGAAGATAAAGCAAATAAAATGGCAGCAGCTGCTTCTTCTTCAGAG
GTGTCTATGAAGTCTTGTAACGAGACTGGTAGGATTCCTATGGAAGGGCA
GAATAGTAATTCCACAACTTCCGGTGTCAAACGAGTTGGGGACCCCGAAA
TGGCGCTCTACACGGAGCTGTGGCATGCCTGCGCCGGTCCTTTGGTCACC
GTCCCTCGAGAAGGCGAGCGCGTGTACTACTTCCCTCAAGGCCACATAGA
GCAGGTGGAAGCGTCAACTAATCAGGTCGCAGACCAGCAAATGCCAGTTT
ATGATCTTCCTTCAAAGATACTCTGTCGTGTAATTAACGTCCAATTAAAG
GCTGAACCTGATACTGATGAGGTGTTTGCACAAGTGACTTTACTTCCAGA
GTCAAACCAAGATGAGAACGCGGTGGAGAAAGAACCACCTCCACCCCCGC
CACCAAGATTTCACGTGCATTCGTTTTGTAAAACACTAACGGCATCGGAT
ACAAGTACTCATGGTGGGTTTTCGGTGCTGAGACGGCATGCTGATGAGTG
TCTTCCACCCTTGGACATGTCACGGCAGCCTCCCACACAGGAGTTGGCTG
CTAAGGATTTGCATGGAAATGAGTGGCGGTTCCGGCATATTTTCAGGGGT
CAACCACGTAGACACTTGCTTCAGAGTGGATGGAGTGTTTTTGTTAGCTC
AAAAAGACTAGTTGCAGGGGATGCTTTTATATTTCTGAGG
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