CB290669

Overview
NameCB290669
Unique NameCB290669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:21..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 5.797e-91
Identity = 169/201 (84.08%), Postives = 183/201 (91.04%), Query Frame = 1
Query:  178 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+H+E TGNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+
Sbjct:    1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVF 201          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 9.889e-91
Identity = 171/202 (84.65%), Postives = 180/202 (89.11%), Query Frame = 1
Query:  175 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            M  K +KAEKKIAYDAKLC L+EEY QILV  +DNVGSNQLQNIR+GLRGDSVVLMGKNTMMKR++RMHAEKTGN A+LNLIPLL GNVGLIFTKGDL            GAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+
Sbjct:    1 MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVF 202          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 9.889e-91
Identity = 169/202 (83.66%), Postives = 183/202 (90.59%), Query Frame = 1
Query:  175 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            M VKA+KAEKKI YD+KLCQLL EY+QILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+HA+KTGN AFL+L+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV+SVY+NGSV+
Sbjct:    1 MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVF 202          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.687e-90
Identity = 168/201 (83.58%), Postives = 183/201 (91.04%), Query Frame = 1
Query:  178 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+H+E +GNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+
Sbjct:    1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVF 201          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.579e-88
Identity = 169/202 (83.66%), Postives = 178/202 (88.12%), Query Frame = 1
Query:  175 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            M  KA+KAEKKI YD KLCQLL+EYTQILV  ADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+HAEKTGN AFLNLIPLL GNVGLIFTKG L            GAPA VGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+
Sbjct:    1 MAPKATKAEKKIVYDGKLCQLLDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNTMMKRSVRIHAEKTGNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGAPACVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVF 202          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 315.079 bits (806), Expect = 2.787e-85
Identity = 154/202 (76.24%), Postives = 178/202 (88.12%), Query Frame = 1
Query:  175 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            M +K +KAEKK+AYD KLCQLL+EYT++L+A ADNVGSNQLQ IR+GLRGDS+VLMGKNT+++R I++HA+ TGN  FL L+PLL GNVGLIFTKGDL            GAPARVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSE+ALLAKLGIRPFSYGLV+ +VY++GSV+
Sbjct:    1 MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVF 202          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 305.449 bits (781), Expect = 2.208e-82
Identity = 155/202 (76.73%), Postives = 175/202 (86.63%), Query Frame = 1
Query:  175 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            M +K +KAEKKIAYD KLC LL+EYT++L+A ADNVGS QLQ+IRRGLRGDSVVLMGKNT+++R I+++AEKTGN  F  L+ LL GNVGLIFTKGDL            GAPARVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KG+KVGSSE+ALLAKLGIRPFSYGL V SVYE+GSV+
Sbjct:    1 MAIKRTKAEKKIAYDKKLCSLLDEYTKVLIALADNVGSKQLQDIRRGLRGDSVVLMGKNTLIRRCIKVYAEKTGNHTFDPLMDLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSESALLAKLGIRPFSYGLQVTSVYEDGSVF 202          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.431e-81
Identity = 156/202 (77.23%), Postives = 172/202 (85.15%), Query Frame = 1
Query:  175 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            M VK +KAEKKIAYD KLCQLL+EY+Q+L+A+ADNVGSNQLQ IR GLRGDS+VLMGKNTMMKR+IR+HAE TGN    N+  L   NVGLIFTKGDL            GAPAR GLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT VELI+KG+KVGSSEAALLAKLGIRPFSYGL V+SVY++GSV+
Sbjct:    1 MAVKPTKAEKKIAYDQKLCQLLDEYSQVLIASADNVGSNQLQAIRIGLRGDSIVLMGKNTMMKRSIRLHAENTGNENLRNVEQLFLPNVGLIFTKGDLNQVREEISKYKVGAPARFGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITAVELIKKGEKVGSSEAALLAKLGIRPFSYGLNVESVYDDGSVF 202          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_CERCA (60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.069e-52
Identity = 104/201 (51.74%), Postives = 136/201 (67.66%), Query Frame = 1
Query:  178 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            +V+ +KA  K  Y  K+ +L +EY +  +  ADNVGS Q+QNIR  LRG  VVLMGKNTMM++ IR H E   N     L+P ++GNVG +FTKGDL             APAR G +AP+ V++P  NTGL P +TSFFQ L+IPTKI+KGT+EII  V +++ GDKVG+SEA LL  L I PFSYGL +  VY++GS++
Sbjct:    1 MVRENKAAWKAQYFLKVVELFDEYPKCFIVGADNVGSKQMQNIRTSLRGLGVVLMGKNTMMRKAIRGHLEN--NAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAPLPVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLAITQVYDSGSIF 199          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_DROME (60S acidic ribosomal protein P0 OS=Drosophila melanogaster GN=RpLP0 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.396e-52
Identity = 104/201 (51.74%), Postives = 138/201 (68.66%), Query Frame = 1
Query:  178 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            +V+ +KA  K  Y  K+ +L +E+ +  +  ADNVGS Q+QNIR  LRG +VVLMGKNTMM++ IR H E   N     L+P ++GNVG +FTKGDL             APAR G +AP+ V++P  NTGL P +TSFFQ L+IPTKI+KGT+EII  V +++ GDKVG+SEA LL  L I PFSYGL+V  VY++GS++
Sbjct:    1 MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAIRGHLEN--NPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIF 199          
The following BLAST results are available for this feature:
BLAST of CB290669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RLA02_ARATH5.797e-9184.0860S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA0_SOYBN9.889e-9184.6560S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA01_ARATH9.889e-9183.6660S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA03_ARATH1.687e-9083.5860S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA0_LUPLU1.579e-8883.6660S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_ORYSJ2.787e-8576.2460S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA0_MAIZE2.208e-8276.7360S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_CHERU1.431e-8177.2360S acidic ribosomal protein P0 OS=Chenopodium rub... [more]
RLA0_CERCA1.069e-5251.7460S acidic ribosomal protein P0 OS=Ceratitis capit... [more]
RLA0_DROME1.396e-5251.7460S acidic ribosomal protein P0 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ch04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290669 ID=CB290669; Name=CB290669; organism=Citrus sinensis; type=EST; length=780bp
GCACTATGGTTTTTTCTTGTACACTTCTTTCACTCTCTTTGTATCTCGTT
GAGGTTAAAGAGACGGCAATTCCGCTGCTGTCCGCCTTGGCAAGCCGCTG
CTTCGTCTTGGCCCTCGATTTTGTATAAATTTACAACTTTTTACCACCAA
CAAAAGTAGAACCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGA
GAAGAAGATCGCGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACA
CCCAAATATTGGTGGCGGCCGCCGACAACGTGGGGTCCAATCAACTCCAG
AACATTCGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAA
CACTATGATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACA
CTGCCTTTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATT
TTCACAAAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAA
GGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTG
TTCCTCCCGGCAACACAGGTCTCGACCCCTCCCAGACCTCCTTCTTCCAG
GTGCTTAACATTCCCACCAAGATTAACAAGGGTACTGTTGAAATTATCAC
ACCTGTGGAGCTTATTAGGAAGGGTGACAAGGTGGGATCTTCTGAGGCAG
CCCTGCTTGCAAAGCTTGGGATTAGACCCTTCTCTTATGGTCTTGTTGTC
CAGTCTGTCTATGAAAACGGTTCCGTCTAC
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