CB290673

Overview
NameCB290673
Unique NameCB290673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290673 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.491e-57
Identity = 121/231 (52.38%), Postives = 158/231 (68.40%), Query Frame = 1
Query:  115 SNSKFCSSNFLMEGELPKLK--DGALYNKSSMLLELSASDDISAYKREIEEK-GFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDH-TIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKI 795
            + S  CSS  L E E  + K  DGA    ++ LLE +A DD+S++KREIEE    ++DE  FWY RR+GSKKMGFEERTP+M+AAM+GS+ VL Y+I TG+ DVNR C  +  TALHCAV+G + S  E++K+LL ASA  NCVDA GNKPVDL+    +   +  ++A+E+LL G H ++ EEEE       +L    T   +YP D SLPDIN GVYGTDDFRM++FK+
Sbjct:    4 AKSNLCSSKTLTEVEFMRQKSEDGA---SATCLLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANGNKPVDLLAKDSRFVPNQSRKAVEVLLTGIHGSVMEEEE------EELKSVVT---KYPADASLPDINEGVYGTDDFRMFSFKV 222          
BLAST of CB290673 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.665e-57
Identity = 114/208 (54.81%), Postives = 147/208 (70.67%), Query Frame = 1
Query:  193 KSSMLLELSASDDISAYKREIEEKGFD-VDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTI------FEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKI 795
            K S+LLE SA +D+S +K  +EE+G + +D    WYGRR+GSKKMGFEERTP+MIAA+FGS  V+ Y+I TG VDVNR+CGSDG TALHCAV+G + +S E+V LLL  SA+ +  DAYGNKP D+I   +     +R + +E LLKG+  +       E E  V + V      G+E+KEYP+D +LPDI NGVYGTD+FRMYAFKI
Sbjct:   10 KFSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERLLKGNDDLNEVNGQEESEPEVEVEVEVSPPRGSERKEYPVDPTLPDIKNGVYGTDEFRMYAFKI 217          
BLAST of CB290673 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.303e-55
Identity = 111/225 (49.33%), Postives = 151/225 (67.11%), Query Frame = 1
Query:  121 SKFCSSNFLMEGELPKLKDGALYNKSSMLLELSASDDISAYKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKI 795
            S  CSS  L E E  + ++     ++ +LLE +A DD+ ++KRE+EEKG D+DE   WY RR+GSKKMG EERTP+M+AAM+GS+ VL +++ TGK DVNRACG +  T LHCAVAG + +  EV+ +LL ASA VN VDA GN+P+D+     +     R++A+ELLL+G       +E V   +  +SK       YP D SLPDIN GVYG+D+FRMY+FK+
Sbjct:    7 SNLCSSRTLTEIESRQKEE-----ETMLLLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELLLRGGGVGGLIDEAVEEEIKIVSK-------YPADASLPDINEGVYGSDEFRMYSFKV 219          
BLAST of CB290673 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.689e-40
Identity = 95/224 (42.41%), Postives = 128/224 (57.14%), Query Frame = 1
Query:  205 LLELSASDDISAYKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL---VNIP------------------------VPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKI 795
            LLEL+A++D+   +  IE     VDE   WYGR+ GSK M  + RTP+M+AA +GS+ V+K ++     DVNRACG+D  TALHCA +GGA ++ +VVKLLL+A AD+N +DA G +  D+I V  K  L   K  ++ LL  D +   E  L    N+P                         P   K    KKEYP+D SLPDI N +Y TD+FRMY+FK+
Sbjct:   48 LLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGDVIVVPPK--LEGVKLMLQELLSADGSSTAERNLRVVTNVPNRSSSPCHSPTGENGGSGSGSPLGSPFKLKSTEFKKEYPVDPSLPDIKNSIYATDEFRMYSFKV 269          
BLAST of CB290673 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.818e-37
Identity = 88/240 (36.67%), Postives = 140/240 (58.33%), Query Frame = 1
Query:  169 LKDGALYNKS-SMLLELSASDDISAYKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEE---------------------------EELVNIPVPQLSKDGT---EKKEYPIDVSLPDINNGVYGTDDFRMYAFKI 795
            + D A +  S S LLE +A +D+  ++R++ +    +++   WY R+   ++M  E+RTP+M+A+++GS+ V+K+++   + ++N +CG D  TALHCA +G + +S +VVKLLLS  AD N  DA+GN+PVD++ V+  +P    +  +E +LK D  I E+                            + V+ P      D T   EKKEYPID SLPDI +G+Y TD+FRM++FKI
Sbjct:   29 MNDAAEWEHSFSALLEFAADNDVEGFRRQLSDVSC-INQMGLWYRRQRFVRRMVLEQRTPLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADPNIPDAHGNRPVDVLVVSPHAP--GLRTILEEILKKDEIISEDLHASSSSLGSSFRSLSSSPDNGSSLLSLDSVSSPTKPHGTDVTFASEKKEYPIDPSLPDIKSGIYSTDEFRMFSFKI 265          
BLAST of CB290673 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.895e-36
Identity = 95/227 (41.85%), Postives = 124/227 (54.63%), Query Frame = 1
Query:  205 LLELSASDDISAYKREIEEKG-FDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLL---KGDHTIF-------------------EEEELVNIPVPQLSKDG-------TEKKEYPIDVSLPDINNGVYGTDDFRMYAFKI 795
            LLEL+A DD    +R +E       DE   WYGRR        E RTP+M+AA +GS+AVL+ ++    VDVNR CGSDG TALHCA +GG+ S  E VKLLL+A AD +  DA G +P D+I V  K  +   K A++ LL   K  H +                    E+    +  V   +K         +EKKEYP+D SLPDI N +Y +D+FRMY+FKI
Sbjct:   70 LLELAADDDAEGLRRALERAPPAAADEAGLWYGRR-----KVLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADADATDASGYRPADVISVPPK--MFDAKIALQDLLGCPKAGHGVLRVVTRAANSMLSPVSSPTAEDARSPSAAVMMTTKFADLPRVVTSEKKEYPVDPSLPDIKNSIYASDEFRMYSFKI 289          
BLAST of CB290673 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.951e-34
Identity = 81/213 (38.03%), Postives = 122/213 (57.28%), Query Frame = 1
Query:  160 LPKLKDGALYNKSSMLLELSASDDISAYKREIEEKGFDVDEPSFWYGRRI-GSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKI 795
            LP+ +  A    +S+LLEL+A+DD++A +R +EE+   +     WYG    G  ++G E RT  M+AA++GS  VL YV+     +  RA  +DG T LH A AGGA ++    +LLL+A A V+ + A G +  DL+P A      + ++AI LLLK            +   P        KKEYP D++LPD+ +G++ TD+FRMY+FK+
Sbjct:   13 LPQQQKEATVMAASLLLELAAADDVAAVRRVVEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRAT-----AAEKAIRLLLKSPAVSPSSSPKKSASPPSPPPPQEAKKEYPPDLTLPDLKSGLFSTDEFRMYSFKV 220          
BLAST of CB290673 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.998e-29
Identity = 84/232 (36.21%), Postives = 121/232 (52.16%), Query Frame = 1
Query:  178 GALYNKSSMLLELSASDDISAYKREIEEKGFDV----DEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGK-VDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN-IPVPQLSKDGTE--------------------KKEYPIDVSLPDINNGVYGTDDFRMYAFKI 795
            G   ++ + LLEL+A+DD+   +  + E G +     D    WYGR        +E RTP+M+AA +GS  V+  ++  G  VDVNR  G+DG TALHCA +GG++++  VVKLLL+A AD    D+ G  P D+I     SP       +E+LL     +     + +    P LS    E                    KKEYP+D +LPDI + VY +D+FRM+AFK+
Sbjct:   18 GGRRDRLAALLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGR-----SKAYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASP--DALGDLEVLLGRRRALAVATSVASGSSSPPLSSSPDEGNRSPSSRSSSLSPITVDRGKKEYPVDPTLPDIKSSVYASDEFRMFAFKV 242          
BLAST of CB290673 vs. ExPASy Swiss-Prot
Match: C3H67_ORYSJ (Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.234e-19
Identity = 71/207 (34.30%), Postives = 104/207 (50.24%), Query Frame = 1
Query:  178 GALYNKSSMLLELSASDDISAYKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGK-VDVNRACGSDGFTALHCAVAGGAKSSFEVVKLLLSASADVNCVDAYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKI 795
            GA    S+ LLEL+A D+ +     +       DEP+ WY     +   G E  TP+M+AA++GSV  L  ++     VD NRA  S   T LH A AGG+ S+   V  LL+A AD   +D                  H ++RA +L+    +++  +  L+++           +KE+P D SLPDI NG Y +DDFRMY+FK+
Sbjct:    6 GAEAAVSARLLELAADDNAAGLGELLAAWPSLADEPAPWY-----TPARGAEPLTPLMVAAVYGSVGCLDALLSPPYLVDPNRASASSLSTPLHLAAAGGSASAPAAVSRLLAAGADPALLD------------------HLQRRASDLVALPPNSLPLKNHLLSLL--------GARKEWPPDPSLPDIKNGAYASDDFRMYSFKV 181          
The following BLAST results are available for this feature:
BLAST of CB290673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
C3H29_ARATH1.491e-5752.38Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H66_ARATH5.665e-5754.81Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H47_ARATH5.303e-5549.33Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H30_ARATH3.689e-4042.41Zinc finger CCCH domain-containing protein 30 OS=A... [more]
C3H56_ARATH3.818e-3736.67Zinc finger CCCH domain-containing protein 56 OS=A... [more]
C3H24_ORYSJ1.895e-3641.85Zinc finger CCCH domain-containing protein 24 OS=O... [more]
C3H33_ORYSJ3.951e-3438.03Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H50_ORYSJ4.998e-2936.21Zinc finger CCCH domain-containing protein 50 OS=O... [more]
C3H67_ORYSJ1.234e-1934.30Zinc finger CCCH domain-containing protein 67 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ch06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290673 ID=CB290673; Name=CB290673; organism=Citrus sinensis; type=EST; length=795bp
GCACTAGGCTCAAAAGCTGAGTCTTTTTGTTCTTCTTCTTCTATAAAATT
AACACTCTTAAAGAATCAAAGAATCTTATCAACTTATCAAGCTCTACTTA
TAGGAATTGGGTATTCAAATAGTAAATTTTGCAGCTCAAATTTCCTCATG
GAAGGTGAACTCCCCAAGCTGAAAGATGGTGCCTTGTATAACAAATCCTC
AATGTTGCTGGAATTGTCAGCTTCTGACGATATCTCTGCCTATAAGAGAG
AAATAGAAGAGAAGGGTTTTGATGTTGATGAGCCCAGCTTCTGGTATGGT
AGGAGAATTGGGTCAAAAAAGATGGGATTTGAAGAGAGGACCCCAATCAT
GATTGCTGCCATGTTTGGAAGTGTTGCGGTATTGAAATATGTTATTGAAA
CAGGCAAAGTTGATGTGAATAGGGCCTGTGGATCTGATGGTTTCACTGCC
CTTCACTGTGCTGTTGCTGGTGGTGCCAAATCTTCCTTTGAGGTGGTCAA
GCTCTTACTCAGTGCATCTGCTGATGTTAACTGTGTTGATGCGTATGGGA
ATAAGCCAGTCGATCTCATTCCAGTTGCTATGAAATCACCACTCCATTCA
AGAAAAAGGGCAATAGAGTTATTGTTGAAAGGCGATCATACTATTTTTGA
AGAGGAAGAATTGGTGAATATCCCTGTGCCTCAGTTATCAAAAGATGGAA
CTGAGAAGAAAGAGTACCCAATTGATGTATCGTTGCCTGATATAAACAAT
GGAGTTTATGGAACTGATGATTTTAGAATGTACGCTTTTAAGATA
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