CB290685

Overview
NameCB290685
Unique NameCB290685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290685_ssr238 microsatellite CB290685_ssr238:238..252. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:20..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290685 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.461e-51
Identity = 112/177 (63.28%), Postives = 132/177 (74.58%), Query Frame = 3
Query:  147 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFTGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 653
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AF+GPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CB290685 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.549e-37
Identity = 91/198 (45.96%), Postives = 127/198 (64.14%), Query Frame = 3
Query:   78 MAASLATQSMLARTVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFTGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 653
            MA+S    ++ A +   + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CB290685 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.959e-32
Identity = 74/131 (56.49%), Postives = 93/131 (70.99%), Query Frame = 3
Query:  267 PTIPKAEPQPPKKPRMSTGFSEVFAFTGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 653
            PT   A P+P  K + +    +  AF+GPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CB290685 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.724e-32
Identity = 68/121 (56.20%), Postives = 85/121 (70.25%), Query Frame = 3
Query:  294 PPKKPRMSTGFSEVFAFTGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 653
            PP KP+ ST   +  AF+GPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:   50 PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CB290685 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.270e-31
Identity = 67/117 (57.26%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  294 PPKKPRMSTGFSEVFAFTGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 641
            PP KP+ ST   +  AF+GPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of CB290685 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.685e-18
Identity = 60/128 (46.88%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  270 TIPKAEPQPPKKPRMSTG--FSEVFAFTGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVALAFTEFVKG 641
            T P + P PP  P        +EV  F+G APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of CB290685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA2.461e-5163.28Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.549e-3745.96Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU1.959e-3256.49High molecular mass early light-inducible protein ... [more]
ELI9_HORVU9.724e-3256.20Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU1.270e-3157.26Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA4.685e-1846.88Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ch12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290685 ID=CB290685; Name=CB290685; organism=Citrus sinensis; type=EST; length=751bp
GCCGTAAGAACCCGCCGACCTGAAGCACCCAATTCCCGAACCCTAATTTG
TTCTGTTTTCTACTTCATAAATTAAAAATGGCCGCATCACTTGCTACTCA
ATCTATGCTGGCCCGTACTGTAGCAGCTCGTGTGACTGGTATCAGGAGAT
CCGGGGCAAACCAACTTTCCTCCGTCAAGTACTTGCCTAGTCTGCGTAGA
AATGTCAACTTATCCGTGCGCTGCACGGCAGAGGATGAGCAGCAGCAGCA
GCAGAAAGATGATCAACCAACCATACCGAAAGCTGAGCCTCAGCCACCAA
AGAAGCCGCGGATGAGCACGGGGTTCTCTGAGGTGTTTGCGTTCACCGGG
CCGGCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGC
TGCATTGGGGGTGGAGATATCCAAGGGTCAGGATGTGTTTGCCCAGTTAT
CAGACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGTTTTGCTCACGGTT
GCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGA
TGGGTTCATGACTTCGGATGCTGAGTTGTGGAATGGGAGGTTTGCTATGC
TGGGCCTTGTTGCTTTGGCTTTCACCGAGTTTGTTAAGGGTGGCACCCTT
GTTTAAGCTTAATTTTGTTTAGATCTGTAGATCTGTATTTTTTTTAACTA
ATTAATGTATGAGATCCTACTGTAATTAAATCTCTAAAAAAAAAAAAAAA
A
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