CB290687

Overview
NameCB290687
Unique NameCB290687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290687_ssr260 microsatellite CB290687_ssr260:260..271. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB290687 vs. ExPASy Swiss-Prot
Match: CCD55_MOUSE (Coiled-coil domain-containing protein 55 OS=Mus musculus GN=Ccdc55 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.280e-24
Identity = 67/174 (38.51%), Postives = 96/174 (55.17%), Query Frame = 3
Query:  279 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDXKAEVTKPEK 794
            V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E+  F DKE FVT AYKKKLEE+      +      +   DVTK+ D+S FY +L  N A G       +      V K EK
Sbjct:   40 VSESLQREAAKKQAMKQTKLEIQKALAEDSTVYEYDSVYDEMQKKKEENNPKLLPGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMENGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEAHLDVTKQKDLSGFYRHL-LNQAVGEEAAPKSSFREARTVIKEEK 212          
BLAST of CB290687 vs. ExPASy Swiss-Prot
Match: CCD55_RAT (Coiled-coil domain-containing protein 55 OS=Rattus norvegicus GN=Ccdc55 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.399e-23
Identity = 67/174 (38.51%), Postives = 96/174 (55.17%), Query Frame = 3
Query:  279 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDXKAEVTKPEK 794
            V   + R+A K +A+++ + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AYKKKLEE+      +      + R DVTK+ D+S FY +L  N A G       +      V K EK
Sbjct:   40 VSESLQREAAKKQAMRQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEENNPKLLMGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEARLDVTKQKDLSGFYRHL-LNQAVGEEAVPKSSFREARTVIKEEK 212          
BLAST of CB290687 vs. ExPASy Swiss-Prot
Match: CCD55_BOVIN (Coiled-coil domain-containing protein 55 OS=Bos taurus GN=CCDC55 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23
Identity = 60/147 (40.82%), Postives = 88/147 (59.86%), Query Frame = 3
Query:  279 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNL 713
            V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AYKKKL+E+      +      + R DVTK+ D+S FY +L
Sbjct:   42 VSESLQREAAKKQAMKQTKLEIQKALAEDSTVYEYDSIYDEMQKKKEESNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEERERRAAALEARLDVTKQRDLSGFYRHL 188          
BLAST of CB290687 vs. ExPASy Swiss-Prot
Match: CCD55_HUMAN (Coiled-coil domain-containing protein 55 OS=Homo sapiens GN=CCDC55 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.547e-22
Identity = 64/151 (42.38%), Postives = 90/151 (59.60%), Query Frame = 3
Query:  279 VEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKL----EEQQRWAREQALRDLRDERDDVTKKTDVSDFYFNL 713
            V   + R+A K +A+K+ + + +KALAED  V++YD  YDEM++K      K+    D +PKYIH L+   + RK+E +   E+K+ +ER  E   F DKE FVT AYKKKL    EE++R  R  AL        DVTK+ D+S FY +L
Sbjct:   41 VSESLQREAAKKQAMKQTKLEIQKALAEDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACL----DVTKQKDLSGFYRHL 187          
BLAST of CB290687 vs. ExPASy Swiss-Prot
Match: CCD55_DANRE (Coiled-coil domain-containing protein 55 OS=Danio rerio GN=ccdc55 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.878e-22
Identity = 53/140 (37.86%), Postives = 87/140 (62.14%), Query Frame = 3
Query:  291 ISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVR--RKVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFY 704
            + ++AIK + +K+   + +KAL ED  V++YD  YD+++++ +   +K+    D +PKYI++L+   +ERK+E +   ERK+ KER  E   FADKE FVT AY++KL+E+Q     +      +   DV K+ D+S FY
Sbjct:   43 LQKEAIKKKMMKQTRLEMQKALEEDSTVYEYDNVYDDIQKQRLESNKKLLGGEDKKPKYINQLLRAVEERKKEQERRDERKIQKEREAEGEKFADKEAFVTSAYRQKLKERQEELEREKREAELEAALDVKKQKDLSGFY 182          
BLAST of CB290687 vs. ExPASy Swiss-Prot
Match: CCD55_CAEBR (Coiled-coil domain-containing protein 55 homolog OS=Caenorhabditis briggsae GN=ccdc-55 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.645e-14
Identity = 48/126 (38.10%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  315 RALKEIEEQQRKALAEDPNVFDYDGCYDEMKQ-KSVRRKVQDRADT--QPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKK 683
            R  K  E + +KA AEDP +FDYDG YDE++  K+ +++   +AD   + KY   +I     R+ E     ER+  KER KE   F DKE FVTGAY+K+ EE +++  ++A     ++   V K+
Sbjct:   51 RIQKAAEREHQKAEAEDPTIFDYDGNYDEIQAIKNEKKEEARKADKNKESKYAEAIIKAHARRQLEQFSREERQQIKEREKEAGEFDDKEVFVTGAYRKQQEEVKKYREQEAEEAAFNDMTSVQKQ 176          
BLAST of CB290687 vs. ExPASy Swiss-Prot
Match: CCD55_CAEEL (Coiled-coil domain-containing protein 55 homolog OS=Caenorhabditis elegans GN=ccdc-55 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.892e-14
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  315 RALKEIEEQQRKALAEDPNVFDYDGCYDEMKQ-KSVRRKVQDRADT--QPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKK 683
            R  K  E + +KA AEDP +FDYDG YDE++  K+ +++   +AD   + KY   +I     R+ E     ER+  +ER KE   F DKE FVTGAY+K+ EE ++   ++A     ++   V K+
Sbjct:   51 RVQKAAEREHQKAEAEDPTIFDYDGNYDEIQAIKNEKKEEARKADKNRESKYAENIIKAHARRQLEQFSREERQQLREREKEGDEFDDKEVFVTGAYRKQQEEVKKHREQEAEEAAFNDMTSVQKQ 176          
The following BLAST results are available for this feature:
BLAST of CB290687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CCD55_MOUSE6.280e-2438.51Coiled-coil domain-containing protein 55 OS=Mus mu... [more]
CCD55_RAT1.399e-2338.51Coiled-coil domain-containing protein 55 OS=Rattus... [more]
CCD55_BOVIN3.117e-2340.82Coiled-coil domain-containing protein 55 OS=Bos ta... [more]
CCD55_HUMAN1.547e-2242.38Coiled-coil domain-containing protein 55 OS=Homo s... [more]
CCD55_DANRE5.878e-2237.86Coiled-coil domain-containing protein 55 OS=Danio ... [more]
CCD55_CAEBR2.645e-1438.10Coiled-coil domain-containing protein 55 homolog O... [more]
CCD55_CAEEL5.892e-1437.30Coiled-coil domain-containing protein 55 homolog O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01da02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290687 ID=CB290687; Name=CB290687; organism=Citrus sinensis; type=EST; length=796bp
GCTTTCGTGAACACTTCAGAAGAAGCAGATTATCACAGCTTTAAATTGAT
CACGTGCTCTGTGCTCAATTCTGTACGAAAAGAACCTTTAATCAGCTTTG
TAAACTCGTTCGCTGGAGCCGATGAATCGACTCAGCGTATAATTGAAAAA
TCATGAGTAAATACGGCTTGCAACTTAGGGTTAATCCATCACAACAAAAG
AAACAGCCAACAAATAAGCCTCCGTTGCCACCGCCTAAGGCTTTTGGTCT
TGATGACGACGGCGGCGGCGGCGACGACGTGGAGGGAGAAATCTCCCGCC
AAGCTATCAAGAACAGGGCTCTCAAAGAGATTGAGGAGCAGCAAAGGAAG
GCCTTGGCAGAGGATCCAAATGTGTTTGATTATGACGGATGTTATGATGA
GATGAAGCAGAAAAGTGTCCGACGTAAAGTGCAGGATCGTGCAGACACAC
AGCCGAAATATATTCATAAACTGATTCACAAAGCTGACGAGCGAAAGCGG
GAGCATGACATAATCTATGAGAGGAAACTTACTAAAGAGAGAAGCAAGGA
AGACCACCTTTTTGCAGACAAGGAAAAATTTGTTACAGGTGCTTACAAGA
AGAAACTTGAAGAGCAGCAAAGGTGGGCTCGTGAACAAGCCTTGCGTGAT
CTTCGAGATGAGAGAGATGATGTCACCAAGAAGACTGATGTGAGTGATTT
TTACTTCAACCTTCATAAAAATGTTGCCTTTGGTGGAGGCAACAAGGACT
CAATGAATTTAGACNAGAAGGCTGAAGTAACAAAGCCAGAGAAAGA
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