CB290696

Overview
NameCB290696
Unique NameCB290696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290696 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.277e-35
Identity = 70/173 (40.46%), Postives = 104/173 (60.12%), Query Frame = -2
Query:  296 EFREVCEEYAKEVEKLAYKLMELIALSLGLPPDSFNGFFKDQTTFVRLNHYPPCPAPHLALGVGRHKDAGALTVLAQDDVGGLEVKRKSDGEWVRVKPTPDAYIINVGDIIQVWSNDAYESVEHRVMVNSEKERFSIPFFFFPSHYTMVKPLDELTNEQNPAKYRAYSWGKFL 814
            +F +V ++Y + +  L+ K+MEL+ LSLG+  D F GFF++  + +RLNHYPPC  P L LG G H D  +LT+L QD V GL+V    D +W  ++P P A+++N+GD     SN  ++S  HR +VN E  R S+ FF  P    +VKP  ++  +    KY  ++W  FL
Sbjct:  180 QFGKVYQDYCEAMSSLSLKIMELLGLSLGVNRDYFRGFFEENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSLTILHQDHVNGLQV--FVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESARKSMAFFLCPKKDKVVKPPSDILEKMKTRKYPDFTWSMFL 350          
BLAST of CB290696 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.279e-35
Identity = 74/175 (42.29%), Postives = 106/175 (60.57%), Query Frame = -2
Query:  296 EFREVCEEYAKEVEKLAYKLMELIALSLGLPPDSFNGFFKDQTTFVRLNHYPPCPAPHLALGVGRHKDAGALTVLAQDDVGGLEVKRKSDGEWVRVKPTPDAYIINVGDIIQVWSNDAYESVEHRVMVNSEKERFSIPFFFFPSHYTMVKPLDELTN--EQNPAKYRAYSWGKFL 814
            +F +V +EYA+ +  L+ K+MEL+ +SLG+    F  FF+D  +  RLN+YP C  P LALG G H D  +LT+L QD VGGL+V    D +W  + P P A+++N+GD     +N  Y+S  HR +VNSE+ER +  FF  P    +VKP +EL N  +    KY  ++W  FL
Sbjct:  181 DFGKVYQEYAEAMNTLSLKIMELLGMSLGVERRYFKEFFEDSDSIFRLNYYPQCKQPELALGTGPHCDPTSLTILHQDQVGGLQV--FVDNKWQSIPPNPHAFVVNIGDTFMALTNGRYKSCLHRAVVNSERERKTFAFFLCPKGEKVVKPPEELVNGVKSGERKYPDFTWSMFL 353          
BLAST of CB290696 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.081e-34
Identity = 72/172 (41.86%), Postives = 104/172 (60.47%), Query Frame = -2
Query:  296 FREVCEEYAKEVEKLAYKLMELIALSLGLPPDSFNGFFKDQTTFVRLNHYPPCPAPHLALGVGRHKDAGALTVLAQDDVGGLEVKRKSDGEWVRVKPTPDAYIINVGDIIQVWSNDAYESVEHRVMVNSEKERFSIPFFFFPSHYTMVKPLDELTNEQNPAKYRAYSWGKFL 811
            F +V +EY + +  L+ K+MEL+ LSLG+  D F  FF++  + +RLN+YPPC  P L LG G H D  +LT+L QD V GL+V    + +W  ++P P A+++N+GD     SND Y+S  HR +VNSE ER S+ FF  P    +V P  EL +     +Y  ++W  FL
Sbjct:  183 FGKVYQEYCEAMSSLSLKIMELLGLSLGVKRDYFREFFEENDSIMRLNYYPPCIKPDLTLGTGPHCDPTSLTILHQDHVNGLQV--FVENQWRSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESERKSLAFFLCPKKDRVVTPPRELLDSITSRRYPDFTWSMFL 352          
BLAST of CB290696 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.726e-32
Identity = 71/169 (42.01%), Postives = 99/169 (58.58%), Query Frame = -2
Query:  296 VCEEYAKEVEKLAYKLMELIALSLGLPPDSFNGFFKDQTTFVRLNHYPPCPAPHLALGVGRHKDAGALTVLAQDDVGGLEVKRKSDGEWVRVKPTPDAYIINVGDIIQVWSNDAYESVEHRVMVNSEKERFSIPFFFFPSHYTMVKPLDELTNEQNPAKYRAYSWGKFL 802
            V ++Y +E+++L+  +MEL+ LSLG+    +  FF D ++ +R N+YPPCP P   LG G H D  ALT+L QDDVGGLEV    DGEW  V P P A +IN+GD     SN  Y+S  HR +VN  +ER S+ FF  P    +V+P     +   P  Y  ++W   +
Sbjct:  188 VYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQDDVGGLEV--LVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRP---PPSAATPQHYPDFTWADLM 351          
BLAST of CB290696 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.726e-32
Identity = 71/169 (42.01%), Postives = 99/169 (58.58%), Query Frame = -2
Query:  296 VCEEYAKEVEKLAYKLMELIALSLGLPPDSFNGFFKDQTTFVRLNHYPPCPAPHLALGVGRHKDAGALTVLAQDDVGGLEVKRKSDGEWVRVKPTPDAYIINVGDIIQVWSNDAYESVEHRVMVNSEKERFSIPFFFFPSHYTMVKPLDELTNEQNPAKYRAYSWGKFL 802
            V ++Y +E+++L+  +MEL+ LSLG+    +  FF D ++ +R N+YPPCP P   LG G H D  ALT+L QDDVGGLEV    DGEW  V P P A +IN+GD     SN  Y+S  HR +VN  +ER S+ FF  P    +V+P     +   P  Y  ++W   +
Sbjct:  188 VYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQDDVGGLEV--LVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRP---PPSAATPQHYPDFTWADLM 351          
BLAST of CB290696 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.023e-32
Identity = 74/173 (42.77%), Postives = 102/173 (58.96%), Query Frame = -2
Query:  317 EFREVCEE----YAKEVEKLAYKLMELIALSLGLPPDSFNGFFKDQTTFVRLNHYPPCPAPHLALGVGRHKDAGALTVLAQDDVGGLEVKRKSDGEWVRVKPTPDAYIINVGDIIQVWSNDAYESVEHRVMVNSEKERFSIPFFFFPSHYTMVK---PLDELTNEQNPAKYRA 814
            EF   C E    ++K+V+KL + L+EL++  LGL       +      F   N+YPPCP P L +G  +H D G +T+L QDD+GGL+V  ++   WV V PTP + ++N+GD +Q+ SND Y SVEHR + N+   R SI  FF  S Y   K   P+ EL +E NP KYRA
Sbjct:  167 EFPTPCGESLIDFSKDVKKLGFTLLELLSEGLGLDRSYLKDYMDCFHLFCSCNYYPPCPQPELTMGTIQHTDIGFVTILLQDDMGGLQVLHQN--HWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISNNVGSRMSITCFFGESPYQSSKLYGPITELLSEDNPPKYRA 337          
BLAST of CB290696 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.493e-31
Identity = 74/188 (39.36%), Postives = 111/188 (59.04%), Query Frame = -2
Query:  272 FREVCEEYAKEVEKLAYKLMELIALSLGLPPDSFNGFFKDQTTF--VRLNHYPPCPAPHLALGVGRHKDAGALTVLAQ-DDVGGLEVKRKSDGEWVRVKPTPDAYIINVGDIIQVWSNDAYESVEHRVMVNSEKERFSIPFFFFPSHYTMVKPLDELTNEQNPAKY-----RAYSWGKFLTTRKGSNF 811
            FR+  E Y+ EV+ +A  L+  +A +L + P+     F D  +   +R+N+YPPCP P   +G+  H D+  LTVL Q +DV GL++K+  DG+WV VKP P+A+I+N+GD++++ +N  Y S+EHR +VNSEKER SI  F     Y  V P   L   Q  A++     + Y+ G F  T  G  +
Sbjct:  167 FRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKK--DGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAY 352          
BLAST of CB290696 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 9.473e-31
Identity = 71/166 (42.77%), Postives = 98/166 (59.04%), Query Frame = -2
Query:  299 EEYAKEVEKLAYKLMELIALSLGLPPDSFNGFFKDQTTFVRLNHYPPCPAPHLALGVGRHKDAGALTVLAQDDVGGLEVKRKSDGEWVRVKPTPDAYIINVGDIIQVWSNDAYESVEHRVMVNSEKERFSIPFFFFPSHYTMVKPLDELTNEQNPAKYRAYSWGKF 796
            E++A E E LAY L E++A   G     F       T ++R+N YPPCP P    G+  H D+  LT+L QD VGGL++ +  D  W+ VKP P A IIN+GD+ Q WSN  Y+SVEHRVM N + ERFS  +F  PS+  +++      +   PA YR +S+ +F
Sbjct:  156 EKFASESEALAYMLAEVLAEKSGQNSSFFKENCVRNTCYLRMNRYPPCPKPSEVYGLMPHTDSDFLTILYQDQVGGLQLIK--DNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVERFSTAYFMCPSYDAVIE-----CSSDRPA-YRNFSFREF 313          
BLAST of CB290696 vs. ExPASy Swiss-Prot
Match: FLS_EUSGR (Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.237e-30
Identity = 72/166 (43.37%), Postives = 104/166 (62.65%), Query Frame = -2
Query:  320 FREVCEEYAKEVEKLAYKLMELIALSLGLPPDSF-NGFFKDQTTFV-RLNHYPPCPAPHLALGVGRHKDAGALTVLAQDDVGGLEVKRKSDGEWVRVKPTPDAYIINVGDIIQVWSNDAYESVEHRVMVNSEKERFSIPFFFFPSHYTMVKPLDELTNEQNPAKYR 811
            +RE  EEYAK ++ +   L + ++L L L P+SF +G   D   ++ ++N+YPPCP P LALGV  H D  A+TVL  ++V GL+V +  DG W   K  P+A I+++GD +++ SN  Y+SV HR  VN EK R S P F  P     V P+ +L NE+NPAK++
Sbjct:  155 YREANEEYAKRLQLVVDNLFKYLSLGLDLEPNSFKDGAGGDDLVYLMKINYYPPCPRPDLALGVA-HTDMSAITVLVPNEVPGLQVYK--DGHWYDCKYIPNALIVHIGDQVEIMSNGKYKSVYHRTTVNKEKTRMSWPVFLEPPPDHEVGPIPKLVNEENPAKFK 317          
BLAST of CB290696 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.600e-30
Identity = 65/170 (38.24%), Postives = 98/170 (57.65%), Query Frame = -2
Query:  296 EVCEEYAKEVEKLAYKLMELIALSLGLPPDSFNGFFKDQTTFVRLNHYPPCPAPHLALGVGRHKDAGALTVLAQDDVGGLEVKRKSDGEWVRVKPTPDAYIINVGDIIQVWSNDAYESVEHRVMVNSEKERFSIPFFFFPSHYTMVKPLDELTNEQNPAKYRAYSWGKFL 805
            EV   Y  E+ +L+ ++ME++  SLG+    +  FF+   + +RLN+YPPC  P   LG G H D  +LT+L QD+VGGL+V   ++G W  ++P  DA+++N+GD     SN  Y+S  HR +VNS+  R S+ FF  P    +V P   L +  NP  Y  ++W   L
Sbjct:  162 EVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDNVGGLQV--HTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLL 329          
The following BLAST results are available for this feature:
BLAST of CB290696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
GAOX2_ARATH1.277e-3540.46Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
GAOX3_ARATH8.279e-3542.29Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
GAOX1_ARATH1.081e-3441.86Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
GAOX2_ORYSJ1.726e-3242.01Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI1.726e-3242.01Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
ACCH3_SOLLC5.023e-3242.771-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
SRG1_ARATH2.493e-3139.36Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
G2OX8_ARATH9.473e-3142.77Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
FLS_EUSGR1.237e-3043.37Flavonol synthase/flavanone 3-hydroxylase OS=Eusto... [more]
GAO1B_WHEAT3.600e-3038.24Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01da07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290696 ID=CB290696; Name=CB290696; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTTCAGAAAACATATTTTATTAATGTGCCATTTTGA
CTCCAACTAGCAGATGACATTATTGCAAATCCCCTTATTCCATCACATAA
TATATTCACATATAGGAAGAATTCGAAGATGATACACACTCCATGTATAT
GTGTGTGAATTTATAATTAAATTAATTACTTGCTGTTTATAGAGAGTGCT
CTTTCCAGCTTATCGGCTAACTCTTGTACCCTGAAGTGATAAATTTGAAC
GTTCTCAACATCAAGTTTCTTGAAATTACTGCCTTTTCGAGTAGTTAAAA
ATTTCCCCCAACTGTATGCTCTGTATTTAGCAGGATTCTGCTCGTTTGTA
AGCTCATCCAATGGCTTCACCATTGTGTAATGAGATGGGAAGAAAAAAAA
TGGAATTGAAAACCTTTCCTTCTCAGAATTCACCATAACCCTATGCTCCA
CACTCTCATAAGCATCATTGCTCCATACCTGAATAATGTCACCAACATTT
ATGATATAAGCATCCGGGGTGGGTTTGACGCGAACCCACTCCCCGTCTGA
TTTTCTCTTCACCTCAAGACCTCCGACATCATCTTGAGCAAGGACGGTAA
GGGCGCCGGCGTCCTTGTGTCTGCCGACGCCGAGGGCGAGGTGGGGAGCT
GGGCACGGTGGGTAGTGATTAAGTCTAACAAAGGTGGTTTGATCTTTGAA
AAAGCCATTGAAGCTGTCTGGTGGGAGTCCCAGGCTCAGGGCTATAAGTT
CCATCAACTTGTATGCAAGTTTTTCCACTTCTTTAGCATACTCTTCACAT
ACCTCTCTGAATTCA
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