CB290700

Overview
NameCB290700
Unique NameCB290700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290700_ssr76 microsatellite CB290700_ssr76:76..85. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12263 contig Csv1_Contig12263:95..928. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290700 vs. ExPASy Swiss-Prot
Match: NSP5_ARATH (Nitrile-specifier protein 5 OS=Arabidopsis thaliana GN=NSP5 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.250e-75
Identity = 127/220 (57.73%), Postives = 164/220 (74.55%), Query Frame = -1
Query:  175 LYSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 834
            L+S+DT TN+W LL+  + G P RSYHS A DDR VY+FGG    GR+N L  +DVVD+KW++YP+AGE CKGRG PGL+V +G+IWV++GF G E+ D+HCFD A  QW  VET+G+ P ARSVF  V  GK+IV+YGGE +P +L H+GAGK +GE+Y LDTETLVW R   G   +  P  RGWCAF   ++ G+ GLLV+GGNSP+N+RLDD+ F+
Sbjct:  100 LHSYDTETNEWKLLAPVEEGLPGRSYHSMAGDDRKVYVFGGVTAKGRVNTLHAYDVVDQKWVEYPAAGEACKGRGAPGLVVVEGRIWVLFGFDGNELGDIHCFDLASEQWKAVETTGDVPAARSVFPAVSYGKYIVIYGGEEEPHELMHMGAGKMSGEVYQLDTETLVWERIVCG-NEEEKPSQRGWCAFTKAVKDGEEGLLVHGGNSPTNERLDDLVFW 318          
BLAST of CB290700 vs. ExPASy Swiss-Prot
Match: NSP4_ARATH (Nitrile-specifier protein 4 OS=Arabidopsis thaliana GN=NSP4 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.200e-64
Identity = 109/219 (49.77%), Postives = 148/219 (67.58%), Query Frame = -1
Query:  175 YSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 831
            YSFDT TN+W LL+  + GP  RS+HS AAD+ +VY+FGG   + RLN L  +++VD+KW    + G++   RGG GL V QGK+WVVYGF G EVDDVH +DP   +W QVET G +P+ RSVF++  +GKHIV++GGE+    L H+G G+     ++LDTETL W R D   G +  P  RGW A      GGK GL+++GG +P+NDR DD++F+
Sbjct:  396 YSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLNTLDSYNIVDKKWFHCSTPGDSLTARGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAALGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGGEEETPSSRGWTASTTATIGGKKGLVMHGGKAPTNDRFDDLFFY 614          
BLAST of CB290700 vs. ExPASy Swiss-Prot
Match: NSP1_ARATH (Nitrile-specifier protein 1 OS=Arabidopsis thaliana GN=NSP1 PE=2 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 1.976e-63
Identity = 109/219 (49.77%), Postives = 147/219 (67.12%), Query Frame = -1
Query:  175 YSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 831
            YSFDT TN+W LL+  + GP  RS+HS AAD+ +VY+FGG   + RLN L  +++VD+KW    + G++   RGG GL V QGK+WVVYGF G EVDDVH +DP   +W QVET G +P+ RSVF++  IGKHIV++GGE+    L H+G G+     ++LDTETL W R D   G +  P  RGW A       GK GL+++GG +P+NDR DD++F+
Sbjct:  247 YSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLNTLDSYNIVDKKWFHCSTPGDSLTARGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAIGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGGEEETPSSRGWTASTTATIDGKKGLVMHGGKAPTNDRFDDLFFY 465          
BLAST of CB290700 vs. ExPASy Swiss-Prot
Match: NSP2_ARATH (Nitrile-specifier protein 2 OS=Arabidopsis thaliana GN=NSP2 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.726e-62
Identity = 109/219 (49.77%), Postives = 146/219 (66.67%), Query Frame = -1
Query:  175 YSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 831
            YSFDT  N+W LL+  + GP  RS+HS  AD+ +VY+FGG   + RL  L  +++VD KW+Q  + G +C  RGG GL V QGK+WVVYGF G EVDDVHC+DPA  +W QVET GEKP ARSVF++  +GKHI+V+GGE+      H G G+ +G  ++LDTETL W + D     +  P  RGW A   G   GK GL+++GG + +NDR  D++F+
Sbjct:  248 YSFDTTKNEWKLLTPVEQGPTPRSFHSMTADENNVYVFGGVSATVRLKTLDAYNIVDHKWVQCSTPGGSCSVRGGAGLEVVQGKVWVVYGFNGCEVDDVHCYDPAQDKWTQVETFGEKPCARSVFASAVVGKHILVFGGEIAMDPKAHEGPGQLSGGTFALDTETLKWEKLDKLGEEEETPSIRGWSASTTGTIDGKKGLVMFGGKAQTNDRFGDLFFY 466          
BLAST of CB290700 vs. ExPASy Swiss-Prot
Match: NSP3_ARATH (Nitrile-specifier protein 3 OS=Arabidopsis thaliana GN=NSP3 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.178e-61
Identity = 108/219 (49.32%), Postives = 145/219 (66.21%), Query Frame = -1
Query:  175 YSFDTRTNQWTLLSNGDAGPPHRSYHSTAADDRHVYIFGGCGVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 831
            YSFDT TN+W LL+  + GP  RS+HS AAD+ +VY+FGG G   R+  L  +++VD+ W    + G++   RGG GL V QGK+W+VYGF G EVDDVH +DPA  +W QVET G KP  RSVF++  IGKHIV++GGE+      H+G G+     ++LDTETL W R D   G+   P  RGW A   G   GK GL+++GG +P+NDR DD++F+
Sbjct:  247 YSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVGAMDRIKTLDSYNIVDKTWFHCSNPGDSFSIRGGAGLEVVQGKVWIVYGFNGCEVDDVHFYDPAEDKWTQVETFGVKPNERSVFASAAIGKHIVIFGGEIAMDPRAHVGPGQLIDGTFALDTETLQWERLDKFEGT---PSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFY 462          
BLAST of CB290700 vs. ExPASy Swiss-Prot
Match: ESP_ARATH (Epithiospecifier protein OS=Arabidopsis thaliana GN=ESP PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 9.200e-53
Identity = 105/236 (44.49%), Postives = 145/236 (61.44%), Query Frame = -1
Query:  175 SFDTRTNQWTLLSNGD--AGPPHRSYHSTAADDRHVYIFGGCGVSGRLND------LWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFA---------GVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPG-PRGWCAFAGGLRGGKHGLLVYGGNSPSNDRLDDIYFF 828
            S+DT T++WT L+  D   GP  R++HS A+D+ HVY+FGG    G +N       +  +++ D KW Q P  G+N + RGG G  V QGKIWVVYGFA           E + V  +DPA  +W +VET+G KP+ARSVF+   +GK+I+++ GEV P   GH G G  + E Y+LDTETLVW +     G +  P  PRGW A+      GK+GLL++GG  P+N+R DD+YF+
Sbjct:  105 SYDTVTSEWTFLTKLDEVGGPEARTFHSMASDENHVYVFGGVSKGGTMNTPTRFRTIEAYNIADGKWAQLPDPGDNFEKRGGAGFAVVQGKIWVVYGFATSIVPGGKDDYESNAVQFYDPASKKWTEVETTGAKPSARSVFAHAVVGKYIIIFAGEVWPDLNGHYGPGTLSNEGYALDTETLVWEKL----GEEGAPAIPRGWTAYTAATVDGKNGLLMHGGKLPTNERTDDLYFY 336          
BLAST of CB290700 vs. ExPASy Swiss-Prot
Match: RABEK_BOVIN (Rab9 effector protein with kelch motifs OS=Bos taurus GN=RABEPK PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.711e-11
Identity = 47/142 (33.10%), Postives = 69/142 (48.59%), Query Frame = -1
Query:  415 DTRTNQWTLLSNGDAGPPHRSYH-STAADDRHVYIFGGCGVSGRLN----DLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEV-DDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGG 822
            DTRT  WT        P  R++H S+AA    +Y+FGG G  G        L  FD     W Q  + G+    R G  ++    K+++  G AG    DD+HC D +  +W ++  +G  PT  +  S V +GKH+ V+GG
Sbjct:  122 DTRT--WTTPEVTGPPPSPRTFHTSSAAIGDQLYVFGG-GERGAQPVQDVQLHVFDANTLTWSQPETHGKPPSPRHGHVMVAAGTKLFIHGGLAGDNFYDDLHCIDISDMKWQKLRPTGAAPTGCAAHSAVAVGKHLYVFGG 260          
The following BLAST results are available for this feature:
BLAST of CB290700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NSP5_ARATH2.250e-7557.73Nitrile-specifier protein 5 OS=Arabidopsis thalian... [more]
NSP4_ARATH5.200e-6449.77Nitrile-specifier protein 4 OS=Arabidopsis thalian... [more]
NSP1_ARATH1.976e-6349.77Nitrile-specifier protein 1 OS=Arabidopsis thalian... [more]
NSP2_ARATH3.726e-6249.77Nitrile-specifier protein 2 OS=Arabidopsis thalian... [more]
NSP3_ARATH9.178e-6149.32Nitrile-specifier protein 3 OS=Arabidopsis thalian... [more]
ESP_ARATH9.200e-5344.49Epithiospecifier protein OS=Arabidopsis thaliana G... [more]
RABEK_BOVIN8.711e-1133.10Rab9 effector protein with kelch motifs OS=Bos tau... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01da09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290700 ID=CB290700; Name=CB290700; organism=Citrus sinensis; type=EST; length=834bp
TTTTTTTTTTTTTTTTTCAGTTCTTATCTGCCTTAATATTTATTTCTTTT
ACGCTCAAGGACTTGCTCTACACAAACACACACACTCCTTGATTTCTCTC
ATACGCATATTGCCATAATTACATCACCATCATTATCAAAATGATTAATC
TTCAATCCCATCCAAGCAAGGAGTAAAGAAGTAAATGTCATCAAGCCTAT
CATTACTTGGAGAATTGCCACCGTATACCAGTAGTCCATGTTTTCCACCC
CTAAGCCCACCAGCAAATGCACACCATCCGCGAGGCCCGGGATGATGATC
TGAGCCGGGCCCATCATCCCACCGTGTCCACACCAATGTCTCAGTGTCCA
ATGAGTAAAGTTCACCGGCGAATTTTCCGGCCCCAAGGTGGCCCAAGTCA
CTGGGGTCTACTTCTCCGCCGTAAACGACTATGTGTTTTCCGATCCCAAC
AGTAGAAAATACGCTCCGAGCTGTTGGTTTTTCGCCGCTCGTCTCTACCT
GGGCCCATTGTGCATGGGCTGGATCAAAGCAATGCACATCATCCACTTCC
ACTCCAGCAAAACCATACACAACCCATATCTTCCCCTGGGTCACTATCAA
CCCGGGCCCACCTCTACCCTTGCAGTTCTCCCCTGCCGATGGATATTGGA
TCCATTTTCTATCAACAACATCAAAACCCCATAGATCATTAAGCCGGCCT
GAAACACCACAACCGCCGAAGATGTACACGTGTCGATCATCAGCGGCCGT
TGAGTGGTAGCTCCTATGAGGGGGGCCAGCATCACCGTTAGATAATAGGG
TCCACTGGTTTGTACGCGTGTCAAAAGAGTACAG
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