CB290774

Overview
NameCB290774
Unique NameCB290774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13727 contig Csv1_Contig13727:57..532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 7.602e-41
Identity = 84/105 (80.00%), Postives = 93/105 (88.57%), Query Frame = 1
Query:   16 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG--EKKK 324
            TGLFVGLNKGH+VT++EL PRP  RKGKTSKR  F+R +I+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ GGG  EKKK
Sbjct:    8 TGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 9.929e-41
Identity = 84/105 (80.00%), Postives = 93/105 (88.57%), Query Frame = 1
Query:   16 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG--EKKK 324
            TGLFVGLNKGH+VTK+E PPRP +RKGKTSKR  F+R +I+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ G G  EKKK
Sbjct:    4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 8.405e-40
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 1
Query:   16 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGG---GEKK 321
            TGLFVGLNKGH+VT++EL PRP  RKGKTSKR  F+R +IREVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ GG    EKK
Sbjct:    8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 7.620e-33
Identity = 69/86 (80.23%), Postives = 75/86 (87.21%), Query Frame = 1
Query:   10 PNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 267
            PNTGLFVGLNKGHIVTKKEL PRP+DRKGKTSKR HFVR +IREVAGF PYEKRITELLKVGKDKRALKV + K+G H +  K+ E
Sbjct:    6 PNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVG-HSQESKEEE 90          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_ENTCP (60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.075e-30
Identity = 67/96 (69.79%), Postives = 76/96 (79.17%), Query Frame = 1
Query:   28 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGGE 315
            VGLNKGH VTKK   PRP+ RKG  S+RV  VR V+REVAG+APYE+R+ ELLKVGKDKRALK+ KRKLGTH R KKKREEM+  LRK +A   GE
Sbjct:    6 VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36A_SCHPO (60S ribosomal protein L36-A OS=Schizosaccharomyces pombe GN=rpl36a PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.392e-26
Identity = 55/93 (59.14%), Postives = 77/93 (82.80%), Query Frame = 1
Query:   19 GLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            GL VGLNKG ++TK++LP RP+ RKG+ SKR  FVR+++REVAGFAPYE+R+ EL++  +DKRA K+AK++LGT KRAK K EE+++ ++ SR
Sbjct:    4 GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_IXOSC (60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.050e-26
Identity = 59/100 (59.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:   22 LFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGGEKK 321
            L VGL KGH VTK E  PRP+ RKG  SK   FVR +IREV GFAP+E+R  ELLKV KDKRALK  K++LGTH R K+KR+E+SN L   R     ++K
Sbjct:    7 LAVGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIKKRLGTHLRGKRKRDELSNVLVAQRKAAAHKEK 106          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36B_SCHPO (60S ribosomal protein L36-B OS=Schizosaccharomyces pombe GN=rpl36b PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.022e-26
Identity = 55/93 (59.14%), Postives = 75/93 (80.65%), Query Frame = 1
Query:   19 GLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            GL VGLNKG  +TK++LP RP+ RKG  SKR  FVR+++REVAGFAPYE+R+ EL++  +DKRA K+AK++LGT KRAK K EE+++ ++ SR
Sbjct:    4 GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_XENTR (60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.637e-25
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   28 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            VGLNKGH VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_XENLA (60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.637e-25
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   28 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            VGLNKGH VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98          
The following BLAST results are available for this feature:
BLAST of CB290774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL362_ARATH7.602e-4180.0060S ribosomal protein L36-2 OS=Arabidopsis thalian... [more]
RL363_ARATH9.929e-4180.0060S ribosomal protein L36-3 OS=Arabidopsis thalian... [more]
RL361_ARATH8.405e-4079.0560S ribosomal protein L36-1 OS=Arabidopsis thalian... [more]
RL36_DAUCA7.620e-3380.2360S ribosomal protein L36 OS=Daucus carota GN=RPL3... [more]
RL36_ENTCP2.075e-3069.7960S ribosomal protein L36 OS=Enteromorpha compress... [more]
RL36A_SCHPO1.392e-2659.1460S ribosomal protein L36-A OS=Schizosaccharomyces... [more]
RL36_IXOSC4.050e-2659.0060S ribosomal protein L36 OS=Ixodes scapularis GN=... [more]
RL36B_SCHPO9.022e-2659.1460S ribosomal protein L36-B OS=Schizosaccharomyces... [more]
RL36_XENTR7.637e-2562.2260S ribosomal protein L36 OS=Xenopus tropicalis GN... [more]
RL36_XENLA7.637e-2562.2260S ribosomal protein L36 OS=Xenopus laevis GN=rpl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01de03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01de03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290774 ID=CB290774; Name=CB290774; organism=Citrus sinensis; type=EST; length=476bp
GCACGTGGGCCAAATACTGGTCTCTTTGTTGGATTAAACAAGGGTCATAT
TGTGACGAAGAAGGAACTGCCGCCACGCCCAGCAGATCGCAAAGGGAAAA
CAAGCAAAAGGGTCCACTTCGTGAGGACTGTGATTAGGGAAGTTGCTGGC
TTTGCACCCTATGAGAAAAGGATCACTGAGCTTCTTAAAGTCGGCAAGGA
CAAGAGGGCACTGAAGGTTGCAAAGAGAAAGCTTGGCACTCACAAGAGGG
CAAAGAAGAAGCGGGAGGAGATGTCTAATGCCCTTCGCAAGAGTAGGGCC
CCTGGAGGTGGAGAGAAGAAGAAGTGATGCATAACTTTGCTAGATGTCTT
GTTCACCTGAACTTGGGTTATTAAATTTAGCACAGTGTTTTAGCCTATGT
TGTTTGCCTTTTTTTCCCCTTCATTTCAAAAACTGAGTTAAAGATGTCAA
TTTGAGTGCTAAAAAAAAAAAAAAAA
back to top