CB290777
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC_MOUSE (Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 5.968e-57 Identity = 110/190 (57.89%), Postives = 137/190 (72.11%), Query Frame = -3 Query: 201 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 764 Q A E + D PN GNG DL NY WTQ L E+ ++VP V K + V+ +I++ HL+VGLKGQPP++DGEL+ VK ++ W IED K V + L K N+MEWW L+ PEI+T+K++PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+AK + Sbjct: 143 QDAEDEEDEEDEKDKGKLKPNLGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC_RAT (Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1 SV=1) HSP 1 Score: 218.779 bits (556), Expect = 2.962e-56 Identity = 110/190 (57.89%), Postives = 136/190 (71.58%), Query Frame = -3 Query: 201 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 764 Q A E + D PN GNG DL NY WTQ L E+ ++VP V K + V+ +I++ HL+VGLKGQ P+IDGEL+ VK ++ W IED K V + L K N+MEWW L+ PEI+T+K++PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+AK + Sbjct: 143 QDAEEEEDEEDEKDKGKLKPNLGNGADLPNYRWTQTLSELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQAPVIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC_CHICK (Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 1.470e-55 Identity = 107/189 (56.61%), Postives = 135/189 (71.43%), Query Frame = -3 Query: 201 KAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 761 K + + D N PN GNG DL NY WTQ L E+ +++P V K + V+ +I++ L+VGLKG PP+IDGEL VK ++ W IED KTV + L K N+MEWW L+ PEI+T+K++PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQ+ILKKFM +HPEMDFS+AK + Sbjct: 153 KQETDDEEKDENDKGKLKPNAGNGADLPNYRWTQTLSELDLAIPFKVTFRLKGKDVVVDIQRRRLRVGLKGHPPVIDGELFNEVKVEESSWLIEDGKTVTVHLEKINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQDILKKFMEQHPEMDFSKAKFN 341
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC_BOVIN (Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 1.920e-55 Identity = 108/190 (56.84%), Postives = 137/190 (72.11%), Query Frame = -3 Query: 201 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 764 Q+A E + D PN GNG DL +Y WTQ L E+ ++VP V K + V+ +I++ HL+VGLKGQP I+DGEL+ VK ++ W IED K V + L K N+MEWW L+ PEI+T+K++PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+A+ + Sbjct: 143 QEAEEEEEEDDEKDKGKLKPNLGNGADLPSYRWTQTLSELDLAVPFCVNFRLKGKDVVVDIQRRHLRVGLKGQPAIVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKARFN 332
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC_HUMAN (Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 2.507e-55 Identity = 106/171 (61.99%), Postives = 131/171 (76.61%), Query Frame = -3 Query: 201 PNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 707 PN GNG DL NY WTQ L E+ ++VP V K + ++ +I++ HL+VGLKGQP IIDGEL+ VK ++ W IED K V + L K N+MEWW L+ PEI+T+K++PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+AK + Sbjct: 161 PNLGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 331
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC_EMENI (Nuclear movement protein nudC OS=Emericella nidulans GN=nudC PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.336e-40 Identity = 85/164 (51.83%), Postives = 109/164 (66.46%), Query Frame = -3 Query: 204 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQ--PPIIDGELHMAVKPDDCYWSIEDQ-----KTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKI 674 Y WTQ +++V V++PV A K R + +KK+ +KV +KG+ IDG+ +KP + W++E K V I L K NQMEWW ++ P+ID K+ PENS LSDLD ETR+ VEKMM+DQRQK MG PTSDE +K +ILKKF EHPEMDFS AKI Sbjct: 34 YKWTQTIRDVDVTIPVSANLKGRDLDVVLKKDSIKVKVKGENGEVFIDGQFPHPIKPSESSWTLETTSKPPGKEVSIHLDKVNQMEWWAHVVTTAPKIDVSKITPENSSLSDLDGETRAMVEKMMYDQRQKEMGAPTSDEQRKMDILKKFQKEHPEMDFSNAKI 197
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC_DICDI (Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.690e-35 Identity = 72/161 (44.72%), Postives = 104/161 (64.60%), Query Frame = -3 Query: 201 ENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKV-GLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 680 + Y+W+Q L + T+S+ + KS+ + +I +HL V L IIDG+L+ VK DC W++E K + I L K EWW C+I+G EID ++ P+NS LSD D ETR+ VEKM+++Q +K+ GLPT+DE +KQ I + F EHP+MDFS AK + Sbjct: 11 DRYTWSQTLNDCTLSIKLENPVKSKDLFIKIDNDHLTVKNLITNDTIIDGKLYKNVKKSDCNWTLESGKNLEIELFKLKGQEWWSCIIQGESEIDVTQIKPQNSSLSDFDGETRAMVEKMLYNQNRKAQGLPTTDEEEKQRIFETFKNEHPDMDFSNAKFN 171
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC_SCHPO (Nuclear movement protein nudc OS=Schizosaccharomyces pombe GN=nudc PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 4.601e-33 Identity = 65/163 (39.88%), Postives = 105/163 (64.42%), Query Frame = -3 Query: 207 LDLENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLK--GQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAK 689 L+ Y W Q + +V + + VP GT+++ + ++ + LK+ + + ++ G L + D+ W++E+Q+ + I L K N+MEWW C+IKG P ID ++PENSKLSDLD ETR+TVEKMM +Q QK +DE +++++L+ FM +HPE+DFS + Sbjct: 6 LEEAEYEWDQTIADVDIVIHVPKGTRAKSLQVDMSNHDLKIQINVPERKVLLSGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEPENSKLSDLDEETRATVEKMMLEQSQK-----RTDEQKRKDVLQNFMKQHPELDFSNVR 163
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC3_PONAB (NudC domain-containing protein 3 OS=Pongo abelii GN=NUDCD3 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 7.132e-18 Identity = 52/178 (29.21%), Postives = 96/178 (53.93%), Query Frame = -3 Query: 249 KVQKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVPVPAG-TKSRFVLCEIKKNHLKVGL---KGQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKK 770 +V + PP P++ + P+ NG ENY+W+Q ++ V VPVP K + V + + ++V + G+ +++G+L + + WS+E K V + L+K + WW +++G ID K++ E S ++ +D E ++ ++++ FD QK G P S E++ E+LKK Sbjct: 160 EVPREPPVLPRIQEQFQ--KNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEY-WWNAILEGEEPIDIDKINKERS-MATVDEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKK 333
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC3_HUMAN (NudC domain-containing protein 3 OS=Homo sapiens GN=NUDCD3 PE=1 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 9.314e-18 Identity = 52/178 (29.21%), Postives = 96/178 (53.93%), Query Frame = -3 Query: 249 KVQKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVPVPAG-TKSRFVLCEIKKNHLKVGL---KGQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKK 770 +V + PP P++ + P+ NG ENY+W+Q ++ V VPVP K + V + + ++V + G+ +++G+L + + WS+E K V + L+K + WW +++G ID K++ E S ++ +D E ++ ++++ FD QK G P S E++ E+LKK Sbjct: 160 EVPREPPILPRIQEQFQ--KNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEY-WWNAILEGEEPIDIDKINKERS-MATVDEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKK 333 The following BLAST results are available for this feature:
BLAST of CB290777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB290777 ID=CB290777; Name=CB290777; organism=Citrus sinensis; type=EST; length=823bpback to top |