CB290777

Overview
NameCB290777
Unique NameCB290777
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6379 contig Csv1_Contig6379:396..1216. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC_MOUSE (Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.968e-57
Identity = 110/190 (57.89%), Postives = 137/190 (72.11%), Query Frame = -3
Query:  201 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 764
            Q A   E + D        PN GNG DL NY WTQ L E+ ++VP  V    K + V+ +I++ HL+VGLKGQPP++DGEL+  VK ++  W IED K V + L K N+MEWW  L+   PEI+T+K++PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+AK +
Sbjct:  143 QDAEDEEDEEDEKDKGKLKPNLGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332          
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC_RAT (Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.962e-56
Identity = 110/190 (57.89%), Postives = 136/190 (71.58%), Query Frame = -3
Query:  201 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 764
            Q A   E + D        PN GNG DL NY WTQ L E+ ++VP  V    K + V+ +I++ HL+VGLKGQ P+IDGEL+  VK ++  W IED K V + L K N+MEWW  L+   PEI+T+K++PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+AK +
Sbjct:  143 QDAEEEEDEEDEKDKGKLKPNLGNGADLPNYRWTQTLSELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQAPVIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332          
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC_CHICK (Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.470e-55
Identity = 107/189 (56.61%), Postives = 135/189 (71.43%), Query Frame = -3
Query:  201 KAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 761
            K    + + D N      PN GNG DL NY WTQ L E+ +++P  V    K + V+ +I++  L+VGLKG PP+IDGEL   VK ++  W IED KTV + L K N+MEWW  L+   PEI+T+K++PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQ+ILKKFM +HPEMDFS+AK +
Sbjct:  153 KQETDDEEKDENDKGKLKPNAGNGADLPNYRWTQTLSELDLAIPFKVTFRLKGKDVVVDIQRRRLRVGLKGHPPVIDGELFNEVKVEESSWLIEDGKTVTVHLEKINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQDILKKFMEQHPEMDFSKAKFN 341          
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC_BOVIN (Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.920e-55
Identity = 108/190 (56.84%), Postives = 137/190 (72.11%), Query Frame = -3
Query:  201 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 764
            Q+A   E + D        PN GNG DL +Y WTQ L E+ ++VP  V    K + V+ +I++ HL+VGLKGQP I+DGEL+  VK ++  W IED K V + L K N+MEWW  L+   PEI+T+K++PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+A+ +
Sbjct:  143 QEAEEEEEEDDEKDKGKLKPNLGNGADLPSYRWTQTLSELDLAVPFCVNFRLKGKDVVVDIQRRHLRVGLKGQPAIVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKARFN 332          
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC_HUMAN (Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.507e-55
Identity = 106/171 (61.99%), Postives = 131/171 (76.61%), Query Frame = -3
Query:  201 PNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 707
            PN GNG DL NY WTQ L E+ ++VP  V    K + ++ +I++ HL+VGLKGQP IIDGEL+  VK ++  W IED K V + L K N+MEWW  L+   PEI+T+K++PENSKLSDLD ETRS VEKMM+DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+AK +
Sbjct:  161 PNLGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 331          
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC_EMENI (Nuclear movement protein nudC OS=Emericella nidulans GN=nudC PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.336e-40
Identity = 85/164 (51.83%), Postives = 109/164 (66.46%), Query Frame = -3
Query:  204 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQ--PPIIDGELHMAVKPDDCYWSIEDQ-----KTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKI 674
            Y WTQ +++V V++PV A  K R +   +KK+ +KV +KG+     IDG+    +KP +  W++E       K V I L K NQMEWW  ++   P+ID  K+ PENS LSDLD ETR+ VEKMM+DQRQK MG PTSDE +K +ILKKF  EHPEMDFS AKI
Sbjct:   34 YKWTQTIRDVDVTIPVSANLKGRDLDVVLKKDSIKVKVKGENGEVFIDGQFPHPIKPSESSWTLETTSKPPGKEVSIHLDKVNQMEWWAHVVTTAPKIDVSKITPENSSLSDLDGETRAMVEKMMYDQRQKEMGAPTSDEQRKMDILKKFQKEHPEMDFSNAKI 197          
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC_DICDI (Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.690e-35
Identity = 72/161 (44.72%), Postives = 104/161 (64.60%), Query Frame = -3
Query:  201 ENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKV-GLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS 680
            + Y+W+Q L + T+S+ +    KS+ +  +I  +HL V  L     IIDG+L+  VK  DC W++E  K + I L K    EWW C+I+G  EID  ++ P+NS LSD D ETR+ VEKM+++Q +K+ GLPT+DE +KQ I + F  EHP+MDFS AK +
Sbjct:   11 DRYTWSQTLNDCTLSIKLENPVKSKDLFIKIDNDHLTVKNLITNDTIIDGKLYKNVKKSDCNWTLESGKNLEIELFKLKGQEWWSCIIQGESEIDVTQIKPQNSSLSDFDGETRAMVEKMLYNQNRKAQGLPTTDEEEKQRIFETFKNEHPDMDFSNAKFN 171          
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC_SCHPO (Nuclear movement protein nudc OS=Schizosaccharomyces pombe GN=nudc PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.601e-33
Identity = 65/163 (39.88%), Postives = 105/163 (64.42%), Query Frame = -3
Query:  207 LDLENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLK--GQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAK 689
            L+   Y W Q + +V + + VP GT+++ +  ++  + LK+ +    +  ++ G L   +  D+  W++E+Q+ + I L K N+MEWW C+IKG P ID   ++PENSKLSDLD ETR+TVEKMM +Q QK      +DE +++++L+ FM +HPE+DFS  +
Sbjct:    6 LEEAEYEWDQTIADVDIVIHVPKGTRAKSLQVDMSNHDLKIQINVPERKVLLSGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEPENSKLSDLDEETRATVEKMMLEQSQK-----RTDEQKRKDVLQNFMKQHPELDFSNVR 163          
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC3_PONAB (NudC domain-containing protein 3 OS=Pongo abelii GN=NUDCD3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.132e-18
Identity = 52/178 (29.21%), Postives = 96/178 (53.93%), Query Frame = -3
Query:  249 KVQKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVPVPAG-TKSRFVLCEIKKNHLKVGL---KGQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKK 770
            +V + PP  P++       + P+  NG   ENY+W+Q   ++ V VPVP    K + V   +  + ++V +    G+  +++G+L   +  +   WS+E  K V + L+K  +  WW  +++G   ID  K++ E S ++ +D E ++ ++++ FD  QK  G P S E++  E+LKK
Sbjct:  160 EVPREPPVLPRIQEQFQ--KNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEY-WWNAILEGEEPIDIDKINKERS-MATVDEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKK 333          
BLAST of CB290777 vs. ExPASy Swiss-Prot
Match: NUDC3_HUMAN (NudC domain-containing protein 3 OS=Homo sapiens GN=NUDCD3 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 9.314e-18
Identity = 52/178 (29.21%), Postives = 96/178 (53.93%), Query Frame = -3
Query:  249 KVQKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVPVPAG-TKSRFVLCEIKKNHLKVGL---KGQPPIIDGELHMAVKPDDCYWSIEDQKTVFILLTKQNQMEWWKCLIKGGPEIDTQKVDPENSKLSDLDPETRSTVEKMMFDQRQKSMGLPTSDEMQKQEILKK 770
            +V + PP  P++       + P+  NG   ENY+W+Q   ++ V VPVP    K + V   +  + ++V +    G+  +++G+L   +  +   WS+E  K V + L+K  +  WW  +++G   ID  K++ E S ++ +D E ++ ++++ FD  QK  G P S E++  E+LKK
Sbjct:  160 EVPREPPILPRIQEQFQ--KNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEY-WWNAILEGEEPIDIDKINKERS-MATVDEEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKK 333          
The following BLAST results are available for this feature:
BLAST of CB290777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NUDC_MOUSE5.968e-5757.89Nuclear migration protein nudC OS=Mus musculus GN=... [more]
NUDC_RAT2.962e-5657.89Nuclear migration protein nudC OS=Rattus norvegicu... [more]
NUDC_CHICK1.470e-5556.61Nuclear migration protein nudC OS=Gallus gallus GN... [more]
NUDC_BOVIN1.920e-5556.84Nuclear migration protein nudC OS=Bos taurus GN=NU... [more]
NUDC_HUMAN2.507e-5561.99Nuclear migration protein nudC OS=Homo sapiens GN=... [more]
NUDC_EMENI1.336e-4051.83Nuclear movement protein nudC OS=Emericella nidula... [more]
NUDC_DICDI1.690e-3544.72Nuclear movement protein nudC OS=Dictyostelium dis... [more]
NUDC_SCHPO4.601e-3339.88Nuclear movement protein nudc OS=Schizosaccharomyc... [more]
NUDC3_PONAB7.132e-1829.21NudC domain-containing protein 3 OS=Pongo abelii G... [more]
NUDC3_HUMAN9.314e-1829.21NudC domain-containing protein 3 OS=Homo sapiens G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01de05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01de05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290777 ID=CB290777; Name=CB290777; organism=Citrus sinensis; type=EST; length=823bp
TTTTTTTTTTTTTTTTTGGCACAGAAGGCATCGACTCCCTCCATGCTAAA
TAGATAGCAATTGTCCAATCCTTGTTAACCAATATAAACAAAATTCAAAC
ATCTAATAAGAAGCTTGCGGGGCTGCAAAACAAAACTCCAAATCCACTAA
AAACTTTTGACGTGCATCTACTGCACATCCTAATAAGGAGACTCTATTTA
TGAGATCTTGGCTCTTGAGAAGTCCATCTCTGGATGCTCAGCCATGAATT
TCTTCAAAATCTCCTGTTTCTGCATCTCGTCGCTAGTCGGCAGGCCCATG
GACTTTTGCCTCTGGTCAAACATCATCTTTTCAACAGTCGACCTAGTCTC
TGGATCCAGGTCAGATAATTTACTGTTCTCAGGGTCAACTTTCTGAGTGT
CAATTTCAGGGCCTCCTTTTATCAGACATTTCCACCACTCCATCTGATTC
TGCTTGGTCAAAAGAATAAAAACAGTTTTCTGGTCCTCTATGCTCCAATA
ACAATCATCAGGCTTAACGGCCATATGAAGCTCCCCATCAATTATGGGAG
GCTGCCCCTTGAGTCCAACTTTAAGATGGTTCTTCTTTATCTCACATAAA
ACAAACCTTGATTTTGTACCAGCAGGAACCGGAACACTGACAGTCACCTC
TTGCAGGATTTGTGTCCAGGAGTAATTCTCCAAATCAAGACCATTGCCTT
TATTTGGAGCTCTAGCAGGATTGCCATTGGCATCCAATTGAGGCTCCGGC
GGCGGAGCTTTCTGCACCTTCATCGTCGGCAAATCCTCGAATTTCTCCTC
CTCCTTCTTCTCTTCCTTCATTT
back to top