CB290778

Overview
NameCB290778
Unique NameCB290778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290778_ssr106 microsatellite CB290778_ssr106:106..117. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6379 contig Csv1_Contig6379:48..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290778 vs. ExPASy Swiss-Prot
Match: NUDC_MOUSE (Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.706e-27
Identity = 60/130 (46.15%), Postives = 82/130 (63.08%), Query Frame = 3
Query:  408 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 791
            Q A   E + D        PN GNG DL NY WTQ L E+ ++VP  V    K + V+ +I++ HL+VGLKGQPP++DGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ P
Sbjct:  143 QDAEDEEDEEDEKDKGKLKPNLGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINP 272          
BLAST of CB290778 vs. ExPASy Swiss-Prot
Match: NUDC_RAT (Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.343e-26
Identity = 60/130 (46.15%), Postives = 81/130 (62.31%), Query Frame = 3
Query:  408 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 791
            Q A   E + D        PN GNG DL NY WTQ L E+ ++VP  V    K + V+ +I++ HL+VGLKGQ P+IDGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ P
Sbjct:  143 QDAEEEEDEEDEKDKGKLKPNLGNGADLPNYRWTQTLSELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQAPVIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINP 272          
BLAST of CB290778 vs. ExPASy Swiss-Prot
Match: NUDC_CHICK (Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.907e-26
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 3
Query:  411 KAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 791
            K    + + D N      PN GNG DL NY WTQ L E+ +++P  V    K + V+ +I++  L+VGLKG PP+IDGEL   VK ++  W IED KTV++ L K N+MEWW  L+   PEI+T+K+ P
Sbjct:  153 KQETDDEEKDENDKGKLKPNAGNGADLPNYRWTQTLSELDLAIPFKVTFRLKGKDVVVDIQRRRLRVGLKGHPPVIDGELFNEVKVEESSWLIEDGKTVTVHLEKINKMEWWNKLVSTDPEINTKKINP 281          
BLAST of CB290778 vs. ExPASy Swiss-Prot
Match: NUDC_BOVIN (Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.907e-26
Identity = 59/130 (45.38%), Postives = 82/130 (63.08%), Query Frame = 3
Query:  408 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 791
            Q+A   E + D        PN GNG DL +Y WTQ L E+ ++VP  V    K + V+ +I++ HL+VGLKGQP I+DGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ P
Sbjct:  143 QEAEEEEEEDDEKDKGKLKPNLGNGADLPSYRWTQTLSELDLAVPFCVNFRLKGKDVVVDIQRRHLRVGLKGQPAIVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINP 272          
BLAST of CB290778 vs. ExPASy Swiss-Prot
Match: NUDC_HUMAN (Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.137e-25
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 3
Query:  465 PNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 791
            PN GNG DL NY WTQ L E+ ++VP  V    K + ++ +I++ HL+VGLKGQP IIDGEL+  VK ++  W IED K V++ L K N+MEWW  L+   PEI+T+K+ P
Sbjct:  161 PNLGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINP 271          
BLAST of CB290778 vs. ExPASy Swiss-Prot
Match: NUDC_DICDI (Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  492 ENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKV-GLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 791
            + Y+W+Q L + T+S+ +    KS+ +  +I  +HL V  L     IIDG+L+  VK  DC W++E  K + I L K    EWW C+I+G  EID  +++P
Sbjct:   11 DRYTWSQTLNDCTLSIKLENPVKSKDLFIKIDNDHLTVKNLITNDTIIDGKLYKNVKKSDCNWTLESGKNLEIELFKLKGQEWWSCIIQGESEIDVTQIKP 111          
BLAST of CB290778 vs. ExPASy Swiss-Prot
Match: NUDC_EMENI (Nuclear movement protein nudC OS=Emericella nidulans GN=nudC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.011e-14
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  498 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQ--PPIIDGELHMAVKPDDCYWSIEDQ-----KTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 791
            Y WTQ +++V V++PV A  K R +   +KK+ +KV +KG+     IDG+    +KP +  W++E       K VSI L K NQMEWW  ++   P+ID  K+ P
Sbjct:   34 YKWTQTIRDVDVTIPVSANLKGRDLDVVLKKDSIKVKVKGENGEVFIDGQFPHPIKPSESSWTLETTSKPPGKEVSIHLDKVNQMEWWAHVVTTAPKIDVSKITP 138          
BLAST of CB290778 vs. ExPASy Swiss-Prot
Match: NUDC_SCHPO (Nuclear movement protein nudc OS=Schizosaccharomyces pombe GN=nudc PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.431e-14
Identity = 34/105 (32.38%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  483 LDLENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLK--GQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 791
            L+   Y W Q + +V + + VP GT+++ +  ++  + LK+ +    +  ++ G L   +  D+  W++E+Q+ + I L K N+MEWW C+IKG P ID   +EP
Sbjct:    6 LEEAEYEWDQTIADVDIVIHVPKGTRAKSLQVDMSNHDLKIQINVPERKVLLSGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEP 110          
The following BLAST results are available for this feature:
BLAST of CB290778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NUDC_MOUSE2.706e-2746.15Nuclear migration protein nudC OS=Mus musculus GN=... [more]
NUDC_RAT1.343e-2646.15Nuclear migration protein nudC OS=Rattus norvegicu... [more]
NUDC_CHICK3.907e-2644.96Nuclear migration protein nudC OS=Gallus gallus GN... [more]
NUDC_BOVIN3.907e-2645.38Nuclear migration protein nudC OS=Bos taurus GN=NU... [more]
NUDC_HUMAN1.137e-2550.45Nuclear migration protein nudC OS=Homo sapiens GN=... [more]
NUDC_DICDI1.540e-1437.62Nuclear movement protein nudC OS=Dictyostelium dis... [more]
NUDC_EMENI2.011e-1439.05Nuclear movement protein nudC OS=Emericella nidula... [more]
NUDC_SCHPO3.431e-1432.38Nuclear movement protein nudc OS=Schizosaccharomyc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01de05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01de05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290778 ID=CB290778; Name=CB290778; organism=Citrus sinensis; type=EST; length=791bp
CGAAAAGCTCCTTCACCAAACTAAAGAAAGCAGCGATGGCGATAATCTCC
GATTTCCAAGAAGACGAGAACAAGCCTGACCCCAAGAAGAACCCATCGGC
TTCCGCTTCTTCTTCTTCGCCATCATCGGCTAAGACGTCGTCGTTTAGCG
CGACATTGGATCCGTCGAATCCGCTAGGGTTTCTGGAGAAGGCGTTCGAG
TTTGTGGCTAAAGAGAGCGATTTCCTGACGAAGGACGCTGCCGAGAAGCA
GATCGTGGCGGCCATGCGAGCGGCCAAGGAGAAGAGTAGTAATACTAAGA
AGCAGCCGCAGCCCCAGTCGCCGCACCAGGAGGAGGTTAAGGCTAAGAAA
ATGAAGGAAGAGAAGAAGGAGGAGGAGAAATTCGAGGATTTGCCGACGAT
GAAGGTGCAGAAAGCTCCGCCGCCGGAGCCTCAATTGGATGCCAATGGCA
ATCCTGCTAGAGCTCCAAATAAAGGCAATGGTCTTGATTTGGAGAATTAC
TCCTGGACACAAATCCTGCAAGAGGTGACTGTCAGTGTTCCGGTTCCTGC
TGGTACAAAATCAAGGTTTGTTTTATGTGAGATAAAGAAGAACCATCTTA
AAGTTGGACTCAAGGGGCAGCCTCCCATAATTGATGGGGAGCTTCATATG
GCCGTTAAGCCTGATGATTGTTATTGGAGCATAGAGGACCAGAAAACTGT
TTCTATTCTTTTGACCAAGCAGAATCAGATGGAGTGGTGGAAATGTCTGA
TAAAAGGAGGCCCTGAAATTGACACTCAGAAAGTTGAACCT
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