CB290778
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB290778 vs. ExPASy Swiss-Prot
Match: NUDC_MOUSE (Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.706e-27 Identity = 60/130 (46.15%), Postives = 82/130 (63.08%), Query Frame = 3 Query: 408 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 791 Q A E + D PN GNG DL NY WTQ L E+ ++VP V K + V+ +I++ HL+VGLKGQPP++DGEL+ VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ P Sbjct: 143 QDAEDEEDEEDEKDKGKLKPNLGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINP 272
BLAST of CB290778 vs. ExPASy Swiss-Prot
Match: NUDC_RAT (Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.343e-26 Identity = 60/130 (46.15%), Postives = 81/130 (62.31%), Query Frame = 3 Query: 408 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 791 Q A E + D PN GNG DL NY WTQ L E+ ++VP V K + V+ +I++ HL+VGLKGQ P+IDGEL+ VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ P Sbjct: 143 QDAEEEEDEEDEKDKGKLKPNLGNGADLPNYRWTQTLSELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQAPVIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINP 272
BLAST of CB290778 vs. ExPASy Swiss-Prot
Match: NUDC_CHICK (Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.907e-26 Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 3 Query: 411 KAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 791 K + + D N PN GNG DL NY WTQ L E+ +++P V K + V+ +I++ L+VGLKG PP+IDGEL VK ++ W IED KTV++ L K N+MEWW L+ PEI+T+K+ P Sbjct: 153 KQETDDEEKDENDKGKLKPNAGNGADLPNYRWTQTLSELDLAIPFKVTFRLKGKDVVVDIQRRRLRVGLKGHPPVIDGELFNEVKVEESSWLIEDGKTVTVHLEKINKMEWWNKLVSTDPEINTKKINP 281
BLAST of CB290778 vs. ExPASy Swiss-Prot
Match: NUDC_BOVIN (Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.907e-26 Identity = 59/130 (45.38%), Postives = 82/130 (63.08%), Query Frame = 3 Query: 408 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 791 Q+A E + D PN GNG DL +Y WTQ L E+ ++VP V K + V+ +I++ HL+VGLKGQP I+DGEL+ VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ P Sbjct: 143 QEAEEEEEEDDEKDKGKLKPNLGNGADLPSYRWTQTLSELDLAVPFCVNFRLKGKDVVVDIQRRHLRVGLKGQPAIVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINP 272
BLAST of CB290778 vs. ExPASy Swiss-Prot
Match: NUDC_HUMAN (Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.137e-25 Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 3 Query: 465 PNKGNGLDLENYSWTQILQEVTVSVP--VPAGTKSRFVLCEIKKNHLKVGLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 791 PN GNG DL NY WTQ L E+ ++VP V K + ++ +I++ HL+VGLKGQP IIDGEL+ VK ++ W IED K V++ L K N+MEWW L+ PEI+T+K+ P Sbjct: 161 PNLGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINP 271
BLAST of CB290778 vs. ExPASy Swiss-Prot
Match: NUDC_DICDI (Nuclear movement protein nudC OS=Dictyostelium discoideum GN=nudc PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14 Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 3 Query: 492 ENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKV-GLKGQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 791 + Y+W+Q L + T+S+ + KS+ + +I +HL V L IIDG+L+ VK DC W++E K + I L K EWW C+I+G EID +++P Sbjct: 11 DRYTWSQTLNDCTLSIKLENPVKSKDLFIKIDNDHLTVKNLITNDTIIDGKLYKNVKKSDCNWTLESGKNLEIELFKLKGQEWWSCIIQGESEIDVTQIKP 111
BLAST of CB290778 vs. ExPASy Swiss-Prot
Match: NUDC_EMENI (Nuclear movement protein nudC OS=Emericella nidulans GN=nudC PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.011e-14 Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 3 Query: 498 YSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLKGQ--PPIIDGELHMAVKPDDCYWSIEDQ-----KTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 791 Y WTQ +++V V++PV A K R + +KK+ +KV +KG+ IDG+ +KP + W++E K VSI L K NQMEWW ++ P+ID K+ P Sbjct: 34 YKWTQTIRDVDVTIPVSANLKGRDLDVVLKKDSIKVKVKGENGEVFIDGQFPHPIKPSESSWTLETTSKPPGKEVSIHLDKVNQMEWWAHVVTTAPKIDVSKITP 138
BLAST of CB290778 vs. ExPASy Swiss-Prot
Match: NUDC_SCHPO (Nuclear movement protein nudc OS=Schizosaccharomyces pombe GN=nudc PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.431e-14 Identity = 34/105 (32.38%), Postives = 61/105 (58.10%), Query Frame = 3 Query: 483 LDLENYSWTQILQEVTVSVPVPAGTKSRFVLCEIKKNHLKVGLK--GQPPIIDGELHMAVKPDDCYWSIEDQKTVSILLTKQNQMEWWKCLIKGGPEIDTQKVEP 791 L+ Y W Q + +V + + VP GT+++ + ++ + LK+ + + ++ G L + D+ W++E+Q+ + I L K N+MEWW C+IKG P ID +EP Sbjct: 6 LEEAEYEWDQTIADVDIVIHVPKGTRAKSLQVDMSNHDLKIQINVPERKVLLSGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIEP 110 The following BLAST results are available for this feature:
BLAST of CB290778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB290778 ID=CB290778; Name=CB290778; organism=Citrus sinensis; type=EST; length=791bpback to top |