CB290800

Overview
NameCB290800
Unique NameCB290800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 6.239e-31
Identity = 78/212 (36.79%), Postives = 116/212 (54.72%), Query Frame = -1
Query:  238 GSKIVVTTRNVSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYLNAXXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFA 873
            G+ I++TTR   +  +M +  +  +  L +++ W LF++ AF  H +    KL  I ++I +KC G+PLAAK  G LL  KR  +         EW+ + DSE+W + + +  +L  L LSY+ LP +  +++CF+YCAVFPKD  + K  LI LWMA  +L +           E +N L  RSFFQE E           KMHD++HD A
Sbjct:  284 GASILITTRLEKIGSIMGTLQLYQLSNLSQEDCWLLFKQRAFC-HQTETSPKLMEIGKEIVKKCGGVPLAAKTLGGLLRFKREES---------EWEHVRDSEIWNLPQDENSVLPALRLSYHHLPLD--LRQCFAYCAVFPKDTKIEKEYLIALWMAHSFLLSKGNMELEDVGNEVWNELYLRSFFQEIEVKSGKTYF---KMHDLIHDLA 480          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.282e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = -1
Query:  238 GSKIVVTTRNVSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYLNAXXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFA 873
            G+ ++ TTR   V  +M +     +  L +++ W LF + AF GH       L  I ++I +K  G+PLAAK  G +LC KR             W+ + DS +W + + +  +L  L LSY+ LP +  +K+CF+YCAVFPKD  M K +LI+LWMA G+L +           E +  L  RSFFQE E           KMHD++HD A
Sbjct:  285 GASVLTTTRLEKVGSIMGTLQPYELSNLSQEDCWLLFMQRAF-GHQEEINPNLVAIGKEIVKKSGGVPLAAKTLGGILCFKREERA---------WEHVRDSPIWNLPQDESSILPALRLSYHQLPLD--LKQCFAYCAVFPKDAKMEKEKLISLWMAHGFLLSKGNMELEDVGDEVWKELYLRSFFQEIEVKDGKTYF---KMHDLIHDLA 481          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.471e-29
Identity = 75/217 (34.56%), Postives = 119/217 (54.84%), Query Frame = -1
Query:  226 GSKIVVTTRNVSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYL-NAXXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFAQFVS 873
            GS+I+VTTR+  VA +M + ++ +++PL + + WSLF +  F         ++  +A +I  KC+GLPLA K           G +L  +  V EW+R+L S +W +   K  LL  L +SY  LP++  +KRCF+YC++FPK +   K +++ LWMA+G+L              EYF+ L +RS  Q+ +         R  MHD +++ AQF S
Sbjct:  307 GSQILVTTRSQRVASIMCAVHVHNLQPLSDGDCWSLFMKTVFGNQEPCLNREIGDLAERIVHKCRGLPLAVKT---------LGGVLRFEGKVIEWERVLSSRIWDLPADKSNLLPVLRVSYYYLPAH--LKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKTK--------TRYIMHDFINELAQFAS 504          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 5.839e-29
Identity = 91/280 (32.50%), Postives = 126/280 (45.00%), Query Frame = -1
Query:   34 GSKIVVTTRNVSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYLNAXXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFAQFVSRKECLWVEINGTKELVINFFGEKVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQ 873
            G+ ++ TTR   V  +M +     +  L  ++ W LF + AF GH       L  I ++I +KC G+PLAAK  G +L  KR            EW+ + DS +W + + +  +L  L LSY+ LP +  +++CF YCAVFPKD  M K  LI  WMA G+L +           E +N L  RSFFQE E           KMHD++HD A               T     N     +R I  N+  G    + F E            S Y+PSL Q
Sbjct:  284 GAFVLTTTRLEKVGSIMGTLQPYELSNLSPEDCWFLFMQRAF-GHQEEINPNLMAIGKEIVKKCGGVPLAAKTLGGILRFKREER---------EWEHVRDSPIWNLPQDESSILPALRLSYHHLPLD--LRQCFVYCAVFPKDTKMAKENLIAFWMAHGFLLSKGNLELEDVGNEVWNELYLRSFFQEIEVESGKTYF---KMHDLIHDLA---------------TSLFSANTSSSNIREINANYD-GYMMSIGFAEV----------VSSYSPSLLQ 522          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.878e-27
Identity = 77/212 (36.32%), Postives = 109/212 (51.42%), Query Frame = -1
Query:  238 GSKIVVTTRNVSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYLNAXXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFA 873
            G+ I+ TTR   V  +M +     +  L   +   LF + AF G        L  I ++I +KC G+PLAAK  G LL  KR  +         EW+ + D+E+W + + +  +L  L LSY+ LP +  +++CF+YCAVFPKD  M K  LI LWMA G+L +           E +N L  RSFFQE E           K+HD++HD A
Sbjct:  286 GASILATTRLEKVGSIMGTLQPYHLSNLSPHDSLLLFMQRAF-GQQKEANPNLVAIGKEIVKKCGGVPLAAKTLGGLLRFKREES---------EWEHVRDNEIWSLPQDESSILPALRLSYHHLPLD--LRQCFAYCAVFPKDTKMIKENLITLWMAHGFLLSKGNLELEDVGNEVWNELYLRSFFQEIEAKSGNTYF---KIHDLIHDLA 482          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: RPM1_ARATH (Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.807e-23
Identity = 73/225 (32.44%), Postives = 116/225 (51.56%), Query Frame = -1
Query:  217 GSKIVVTTRNVSVARMMRSTNIIS--IKPLPEDEFWSLFERFAFFGHSSVDR-EKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKVE---EIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYLNAXXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFAQFVSRKE 873
            GS++++TTR+++VA            I+ L EDE W LF   AF       R + LEPIAR++  +C+GLPLA             G+++S+K   +EW+++  +  W++    E+K  + + + LS+NDLP    +KRCF YC++FP +Y M ++ LI +WMAQ ++              Y N L  R+  Q              KMHD++ + A  VS+ E
Sbjct:  307 GSRVMMTTRDMNVASFPYGIGSTKHEIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIA---------SLGSMMSTKKFESEWKKVYSTLNWELNNNHELKI-VRSIMFLSFNDLPYP--LKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRNMLQVI-LWNPFGRPKAFKMHDVIWEIALSVSKLE 518          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: DRL21_ARATH (Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.067e-22
Identity = 76/234 (32.48%), Postives = 118/234 (50.43%), Query Frame = -1
Query:  181 GSKIVVTTRNVSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVD--REKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYL-NAXXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFAQFVSRKECLWVEINGTKEL 873
            GSKIV+TTR+  V+ + ++  I  +K +  +E W L  RFAF G+ SV    ++LE I ++IA +CKGLPLAA+   + L          SK   ++W  +  +           +L  L LSY+ LP    +KRCF+ C++FPK +  ++ EL+ LWMA   L              +Y   L  +SFFQ  +       +    MHD+++D A+ VS   C  +E +   E+
Sbjct:  302 GSKIVLTTRSEIVSTVAKAEKIYQMKLMTNEECWELISRFAF-GNISVGSINQELEGIGKRIAEQCKGLPLAARAIASHL---------RSKPNPDDWYAVSKN----FSSYTNSILPVLKLSYDSLPPQ--LKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQRLD-----ITMTSFVMHDLMNDLAKAVSGDFCFRLEDDNIPEI 514          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: DRL3_ARATH (Probable disease resistance protein At1g15890 OS=Arabidopsis thaliana GN=At1g15890 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22
Identity = 62/167 (37.13%), Postives = 91/167 (54.49%), Query Frame = -1
Query:  385 GSKIVVTTRNVSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVD-REKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRI---LDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYLN 873
            GSKIV TTR+  V R M     + +  LP DE W LF++    G   +   E +  +AR++A KC GLPLA  V G  +  + T         V EWQ +   L+S   +   +++ +L  L  SY+DL  +  VK CF YC++FP+DY + K ELI  WM +G+++
Sbjct:  353 GSKIVFTTRSKDVCRDMEVDGEMKVDCLPPDEAWELFQKKV--GPIPLQSHEDIPTLARKVAEKCCGLPLALSVIGKAMASRET---------VQEWQHVIHVLNSSSHEFPSMEEKILPVLKFSYDDL-KDEKVKLCFLYCSLFPEDYEVRKEELIEYWMCEGFID 507          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: R13L4_ARATH (Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 8.452e-20
Identity = 64/225 (28.44%), Postives = 116/225 (51.56%), Query Frame = -1
Query:  217 GSKIVVTTRNVSVARMMRSTNIISIKP--LPEDEFWSLFERFAFFGHSSV-DREKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILD---SEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYLNAXXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFAQFVSRKE 873
            G  ++VTTR+ SVA+ +++ +  + +P  L  D  W LF   AF  +    +R +LE + ++I  KCKGLPL  K  G L        LL    + +EW+RI +    E+         +++ L LSY++LPS+  +K C    +++P+D  + K++L++ W+ +G++             + F+ L  R   +  +K      I+ CK+HD+V D    +++K+
Sbjct:  289 GGSVIVTTRSESVAKRVQARDDKTHRPELLSPDNSWLLFCNVAFAANDGTCERPELEDVGKEIVTKCKGLPLTIKAVGGL--------LLCKDHVYHEWRRIAEHFQDELRGNTSETDNVMSSLQLSYDELPSH--LKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRNGRSATESGEDCFSGLTNRCLIEVVDK-TYSGTIITCKIHDMVRDLVIDIAKKD 502          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: DRL32_ARATH (Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.452e-20
Identity = 76/255 (29.80%), Postives = 117/255 (45.88%), Query Frame = -1
Query:  139 GSKIVVTTRNVSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQR---ILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYLNA-XXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFA-----QFVSRKECLWVEINGTKELVINFFG-EKVRHIGL 873
            GSKIV TTR+  V + M++   I +  L  DE W LF R           + +  +AR +A KC GLPLA  V G  +  K T         V EW+    +L+S   K   +++ +L  L  SY+ L  N  +K CF YC++FP+D+ + K +LI  W+ +GY+N             +   +L       E E         + KMHD++ + A      F +++E + V+      L+ N    E VR + L
Sbjct:  281 GSKIVFTTRSKEVCKHMKADKQIKVDCLSPDEAWELF-RLTVGDIILRSHQDIPALARIVAAKCHGLPLALNVIGKAMVCKET---------VQEWRHAINVLNSPGHKFPGMEERILPILKFSYDSL-KNGEIKLCFLYCSLFPEDFEIEKDKLIEYWICEGYINPNRYEDGGTNQGYDIIGLLVRAHLLIECELTD------KVKMHDVIREMALWINSDFGNQQETICVKSGAHVRLIPNDISWEIVRQMSL 518          
The following BLAST results are available for this feature:
BLAST of CB290800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RGA3_SOLBU6.239e-3136.79Putative disease resistance protein RGA3 OS=Solanu... [more]
RGA2_SOLBU5.282e-3036.32Disease resistance protein RGA2 OS=Solanum bulboca... [more]
R13L1_ARATH4.471e-2934.56Putative disease resistance RPP13-like protein 1 O... [more]
RGA1_SOLBU5.839e-2932.50Putative disease resistance protein RGA1 OS=Solanu... [more]
RGA4_SOLBU1.878e-2736.32Putative disease resistance protein RGA4 OS=Solanu... [more]
RPM1_ARATH2.807e-2332.44Disease resistance protein RPM1 OS=Arabidopsis tha... [more]
DRL21_ARATH1.067e-2232.48Putative disease resistance protein At3g14460 OS=A... [more]
DRL3_ARATH4.053e-2237.13Probable disease resistance protein At1g15890 OS=A... [more]
R13L4_ARATH8.452e-2028.44Disease resistance RPP13-like protein 4 OS=Arabido... [more]
DRL32_ARATH8.452e-2029.80Probable disease resistance protein At5g43730 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01df05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01df05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290800 ID=CB290800; Name=CB290800; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTTTTTTTTGATGAAATAGCCATGGATTGAAATAAAGATGGAT
TGTAATGACTTGTATCATAAATTAAGAGGCTACGCAATCGATCAAATTCA
AAAAAGGACATAGGAAATGAAGCTCCTCTTTGAAAATTTAACCCTATGTG
ACGGACTTTCTCACCAAAAAAGTTTATGACTAATTCCTTGGTACCATTTA
TTTCTACCCACAAACATTCTTTTCTACTTACAAATTGGGCAAAATCATGT
ACTATGTCATGCATCTTACACCTCAGAATATCATCATCGTCATCATCTTT
TTCAAACTCTTGAAAGAAAGAGCGTGTTGCTAAGATGTTGAAATACTCTT
CTCCAATCATCTCCATTTCTTCGTCTTCATCTGCATTAAGGTAACCTTGA
GCCATCCATAGATTAATCAATTCCCTTTTATTCATATTGTAGTCTTTTGG
AAAGACAGCACAATATGAGAAGCACCGTTTTACCATAGAATTGGAGGGCA
AATCGTTATAACTCAACAACAAAGGAGCCAAAAGACCTTGCTTAATCTCT
TCTACTTTCCACACTTCACTATCTAAAATTCTTTGCCACTCATTTACTAT
ACTTTTAGAGGACAAGAGATTCCCTGTACGTTTATCGCACAAGAGGTTCC
CTGTTACCTTTGCAGCAAGAGGCAGGCCTTTGCACTTGCGTGCAATTTGT
CGTGCGATTGGTTCTAATTTTTCACGATCAACAGAAGAATGACCGAAAAA
TGCGAACCGCTCGAACAACGACCAGAATTCATCTTCAGGCAATGGCTTAA
TGGAGATAATATTTGTTGATCTCATCATACGGGCAACTGACACATTACGT
GTGGTAACCACAATTTTACTTCCGGG
back to top