CB290823

Overview
NameCB290823
Unique NameCB290823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12302 contig Csv1_Contig12302:130..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290823 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 8.035e-72
Identity = 131/263 (49.81%), Postives = 185/263 (70.34%), Query Frame = 2
Query:    8 EKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGKNSFMWFGPTPRVNIMNPDQIKAIFTKINDFQKVNSI--PLARLLIVGLASLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCTEIITKWEKQMSVEGSSELDVWPYLANLTSDVISRTAFGSSYEEGRRIFQLQAELAELTMQVFRSVHIPGWRFLPTKRNRRMKEIDKEIRASLMGIIKNREKAMRAGEAANDDLLGIL 790
            +++EK LRQQG +GN YR L GD+KE+    +EA ++P+  +++I  R+ P ++  +N YG+NSF W G  PR+++M P+ IK + T  + +QK   +  PL + L+ G+ S EG KW+KHR++I+PAF  EKLK MLPAF +   +++TKWEK    +GS E+D++P    LTSDVIS+ AFGS+YEEG +IF+L  EL +LT+   R V+IPGW +LPTKRN+RMKEI+KEI   L  II  R KA++AGE   DDLLG+L
Sbjct:   36 KRIEKRLRQQGFRGNPYRFLVGDVKESGKMHQEALSKPMEFNNDIVPRLMPHINHTINTYGRNSFTWMGRIPRIHVMEPELIKEVLTHSSKYQKNFDVHNPLVKFLLTGVGSFEGAKWSKHRRIISPAFTLEKLKSMLPAFAICYHDMLTKWEKIAEKQGSHEVDIFPTFDVLTSDVISKVAFGSTYEEGGKIFRLLKELMDLTIDCMRDVYIPGWSYLPTKRNKRMKEINKEITDMLRFIINKRMKALKAGEPGEDDLLGVL 298          
BLAST of CB290823 vs. ExPASy Swiss-Prot
Match: CP4F8_HUMAN (Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 52/166 (31.33%), Postives = 85/166 (51.20%), Query Frame = 2
Query:  164 LHKLVNDYGKNSFMWFGP-TPRVNIMNPDQIKAIFTK---INDFQKVNSIPLARLLIVGLASLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCTEIITKWEKQMSVEGSSELDVWPYLANLTSDVISRT--AFGSSYEEG-----RRIFQLQAELAELTMQVFR 628
            L +LV  Y +    W GP TP +N+ +PD ++++      I D   V    L   L  GL    G+KW  HR+L+ PAFH   LK  +  F  S   +  KW++ +++EGS+ LDV+ +++ +T D + +   +F S+ +E        I +L A + +   Q FR
Sbjct:   77 LTQLVATYPQGFVRWLGPITPIINLCHPDIVRSVINTSDAITDKDIVFYKTLKPWLGDGLLLSVGDKWRHHRRLLTPAFHFNILKPYIKIFSKSANIMHAKWQR-LAMEGSTCLDVFEHISLMTLDSLQKCIFSFDSNCQEKPSEYITAIMELSALVVKRNNQFFR 241          
BLAST of CB290823 vs. ExPASy Swiss-Prot
Match: CP4C1_BLADI (Cytochrome P450 4C1 OS=Blaberus discoidalis GN=CYP4C1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 48/151 (31.79%), Postives = 74/151 (49.01%), Query Frame = 2
Query:  185 YGKNSFMWFGPTPRVNIMNPDQIKAIF--TKINDFQKVNSIPLARLLIVGLASLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCTEIITKWEKQMSVEGSSELDVWPYLANLTSDVISRTAFG----SSYEEGRRIFQLQAELAELTMQ 619
            YG    +W GP  +V +  P+ ++ I   TK  D   V S  +   L  GL +  G KW  HRK+I P FH + L + +  F +  +EI+ K  K  S  G  + D++P++ +   D+I  TA G    +  E      +   E++ELTMQ
Sbjct:   70 YGPLYRIWAGPIAQVGLTRPEHVELILRDTKHIDKSLVYSF-IRPWLGEGLLTGTGAKWHSHRKMITPTFHFKILDIFVDVF-VEKSEILVK--KLQSKVGGKDFDIYPFITHCALDIICETAMGIQMNAQEESESEYVKAVYEISELTMQ 216          
The following BLAST results are available for this feature:
BLAST of CB290823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
C72A1_CATRO8.035e-7249.81Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
CP4F8_HUMAN1.220e-1131.33Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1... [more]
CP4C1_BLADI7.909e-1131.79Cytochrome P450 4C1 OS=Blaberus discoidalis GN=CYP... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01dg05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dg05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290823 ID=CB290823; Name=CB290823; organism=Citrus sinensis; type=EST; length=792bp
GCACTAGGAGAAGCTGGAGAAATTCCTGAGACAGCAAGGTTTAAAAGGCA
ATTCTTACAGGCTTCTGTTTGGTGACTTGAAAGAAAATTCCATCGAGCTG
AAGGAAGCCAAAGCCAGACCCCTCAGTTTGGATGACAATATTGCTATTCG
TGTCAATCCATTCCTTCATAAACTGGTAAATGATTATGGTAAGAATTCTT
TCATGTGGTTTGGTCCGACACCAAGGGTGAATATTATGAATCCTGATCAA
ATAAAAGCGATATTTACCAAGATCAATGATTTTCAAAAAGTCAATTCAAT
CCCACTTGCCAGGCTGCTGATAGTTGGATTGGCTAGCCTTGAGGGGGAGA
AGTGGGCTAAACATAGAAAACTCATCAACCCAGCCTTCCACCAAGAGAAG
CTCAAGCTTATGTTGCCAGCATTCTACTTGAGTTGTACCGAAATAATTAC
AAAGTGGGAGAAGCAAATGTCTGTAGAAGGATCATCTGAGTTGGATGTAT
GGCCTTATCTTGCAAATTTAACAAGTGATGTGATTTCTCGAACGGCTTTT
GGGAGTAGTTATGAAGAAGGAAGAAGGATTTTTCAGCTCCAGGCAGAGCT
AGCTGAACTCACAATGCAAGTCTTTCGTTCAGTTCACATTCCAGGATGGA
GGTTTTTACCTACAAAGAGAAATAGGAGAATGAAAGAAATTGACAAGGAA
ATCCGGGCTTCATTGATGGGAATCATCAAAAATAGGGAGAAGGCAATGAG
AGCAGGGGAAGCTGCGAATGATGACTTGTTAGGCATACTGAT
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