CB290843

Overview
NameCB290843
Unique NameCB290843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290843 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.373e-28
Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = 2 
Query:  125 MLGVFSSAIVSPPEELVA--AGSRTPSPKTTSTALVDRFLQANSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 565
            ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CB290843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC1.373e-2843.62Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01dh05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dh05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290843 ID=CB290843; Name=CB290843; organism=Citrus sinensis; type=EST; length=766bp
GCCCTAGGGAGATTTGAACTTTCCAGTTAAAGCCAAAGAGTCCCTAACGG
ATCAAAGTTTTCTTGTAGGAGAGAGAAATTTCTAGGGCGAGAAAGCGAGA
GAAAAGGAAATTTGGTAGCTTAAAATGTTGGGAGTGTTCAGCAGCGCGAT
CGTTTCACCTCCAGAGGAGCTGGTGGCGGCCGGAAGCCGGACTCCGTCGC
CGAAGACCACATCGACGGCACTGGTCGACCGTTTCCTCCAGGCCAACTCG
TCTGCTGTGTCCGTACAGGTCGGGGACAACGTCACCCTCGCGTACACTCA
TCAGAACGAGTCTCCTTTACGGCAAAGATCATTTGCTGTGAAAGATGAGA
TCTTCTGCTTGTTTGAGGGAGCACTTGATAACTTGGGAAGCCTGAGGCAG
CAATATGGACTAGCTAAGTCGGCAAATGAAGTGATCTTGGTGATTGAGGC
ATACAAGGCTCTGCGTGATCGGGCCCCTTACCCACCGAACCATGTCGTTG
GCCACCTTAGTGGGTACTTTGCCTTCATTGTCTACGACAAGTCCACCTCC
ACCTTGTTTGTGGCTTCTGACCAATTTGGTAAGGTTCCTCTTTATTGGGG
AATCACTGCTGATGGACATGTTGCCTTTGCTGATGATGCTGACTTGCTCA
AAGGTGCTTGCGGCAAGTCACTTGCTTCTTTCCCTCAAGGTTGTTTCTTC
TCAACAGCAGTTGGAGGACTGAGAAGCTTTGAGAATCCAAAGAACAAGAT
CACTGCAGTTCCTGCT
back to top