CB290849

Overview
NameCB290849
Unique NameCB290849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290849_ssr132 microsatellite CB290849_ssr132:132..141. BLAST: Citrus ESTs to Prunus persica proteins V1
CB290849_ssr78 microsatellite CB290849_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1796 contig Csv1_Contig1796:20..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290849 vs. ExPASy Swiss-Prot
Match: APXS_ARATH (L-ascorbate peroxidase S, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=APXS PE=1 SV=2)

HSP 1 Score: 333.183 bits (853), Expect = 9.684e-91
Identity = 159/195 (81.54%), Postives = 178/195 (91.28%), Query Frame = 2
Query:  191 RRSSVNRGY-STVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGK 772
            R +SVNR + ST   TK ++SDPDQLK+AREDI+ELL + FCHPILVRLGWHDAGTY+KNI+EWP+RGGAN SLRF++ELKHAANAGLVNAL LI+ IK+KYSG++YADLFQLASATAIEEAGGPKIPMKYGRVD SGPE CPEEGRLP AGPPSPA HLR VFYRMGL+DK+IVALSGAHT+GRSRPERSGWGK
Sbjct:   82 RIASVNRSFNSTTAATKSSSSDPDQLKNAREDIKELLSTKFCHPILVRLGWHDAGTYNKNIKEWPQRGGANGSLRFDIELKHAANAGLVNALNLIKDIKEKYSGISYADLFQLASATAIEEAGGPKIPMKYGRVDASGPEDCPEEGRLPDAGPPSPATHLREVFYRMGLDDKDIVALSGAHTLGRSRPERSGWGK 276          
BLAST of CB290849 vs. ExPASy Swiss-Prot
Match: APXT_ARATH (L-ascorbate peroxidase T, chloroplastic OS=Arabidopsis thaliana GN=APXT PE=2 SV=2)

HSP 1 Score: 320.857 bits (821), Expect = 4.974e-87
Identity = 152/197 (77.16%), Postives = 174/197 (88.32%), Query Frame = 2
Query:  182 ISQRRSSVNRGYSTVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGK 772
            + Q++  +N   + + + KCAASD  QL SA+EDI+ LL++ FCHPILVRLGWHDAGTY+KNIEEWP RGGAN SLRFE ELKHAANAGL+NALKLIQP+KDKY  ++YADLFQLASATAIEEAGGP IPMKYGRVDV  PEQCPEEGRLP AGPPSPA+HLR+VFYRMGL+DKEIVALSGAHT+GR+RP+RSGWGK
Sbjct:   59 VLQKKHPINGTSTRMISPKCAASDAAQLISAKEDIKVLLRTKFCHPILVRLGWHDAGTYNKNIEEWPLRGGANGSLRFEAELKHAANAGLLNALKLIQPLKDKYPNISYADLFQLASATAIEEAGGPDIPMKYGRVDVVAPEQCPEEGRLPDAGPPSPADHLRDVFYRMGLDDKEIVALSGAHTLGRARPDRSGWGK 255          
BLAST of CB290849 vs. ExPASy Swiss-Prot
Match: APX6_ORYSJ (Probable L-ascorbate peroxidase 6, chloroplastic OS=Oryza sativa subsp. japonica GN=APX6 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.468e-86
Identity = 154/185 (83.24%), Postives = 168/185 (90.81%), Query Frame = 2
Query:  227 PTTKCAASDPD---QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGK 772
            P +  AA+  D   +L+ ARED+++LLKST CHPILVRLGWHDAGTYDKNI EWP+ GGAN SLRFE+ELKHAANAGLVNALKLIQPIKDK++GVTYADLFQLASATAIEEAGGPKIPM YGRVDV+ PEQCP EGRLPAAGPPSPAEHLR VFYRMGL+DKEIVALSGAHT+GRSRPERSGWGK
Sbjct:   28 PASSSAAAAGDAAAELRGAREDVKQLLKSTSCHPILVRLGWHDAGTYDKNITEWPKCGGANGSLRFEIELKHAANAGLVNALKLIQPIKDKHAGVTYADLFQLASATAIEEAGGPKIPMIYGRVDVAAPEQCPPEGRLPAAGPPSPAEHLREVFYRMGLSDKEIVALSGAHTLGRSRPERSGWGK 212          
BLAST of CB290849 vs. ExPASy Swiss-Prot
Match: APX8_ORYSJ (Probable L-ascorbate peroxidase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=APX8 PE=2 SV=2)

HSP 1 Score: 314.694 bits (805), Expect = 3.564e-85
Identity = 148/177 (83.62%), Postives = 163/177 (92.09%), Query Frame = 2
Query:  242 AASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGK 772
            AASD  QLKSAREDIRE+LK+T+CHPI+VRLGWHD+GTYDKNIEEWP+RGGA+ SLRF+ EL H ANAGL+NALKLIQPIKDKY G+TYADLFQLASATAIEEAGGPKIPMKYGRVDV+  EQCP EGRLP AGP  PA+HLR VFYRMGL+DKEIVALSGAHT+GRSRP+RSGWGK
Sbjct:   84 AASDAAQLKSAREDIREILKTTYCHPIMVRLGWHDSGTYDKNIEEWPQRGGADGSLRFDAELSHGANAGLINALKLIQPIKDKYPGITYADLFQLASATAIEEAGGPKIPMKYGRVDVTAAEQCPPEGRLPDAGPRVPADHLREVFYRMGLDDKEIVALSGAHTLGRSRPDRSGWGK 260          
BLAST of CB290849 vs. ExPASy Swiss-Prot
Match: APX7_ORYSJ (Probable L-ascorbate peroxidase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=APX7 PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.941e-84
Identity = 146/185 (78.92%), Postives = 164/185 (88.65%), Query Frame = 2
Query:  218 STVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGK 772
            S    +   AS   +LK+AREDIRELLK+T CHPILVRLGWHD+GTYDKNI+EWP+RGGAN SLRF+VELKH ANAGLVNALKL+QPIKDKY  ++YADLFQLASATAIEEAGGPKIPM YGR+DV+GPEQCP EG+LP AGP +PA+HLR VFYRMGL+DKEIV LSGAHT+GRSRPERSGWGK
Sbjct:   77 SASAASAAVASGAAELKAAREDIRELLKTTHCHPILVRLGWHDSGTYDKNIKEWPQRGGANGSLRFDVELKHGANAGLVNALKLVQPIKDKYPNISYADLFQLASATAIEEAGGPKIPMTYGRIDVTGPEQCPPEGKLPDAGPSAPADHLRKVFYRMGLDDKEIVVLSGAHTLGRSRPERSGWGK 261          
BLAST of CB290849 vs. ExPASy Swiss-Prot
Match: APX5_ORYSJ (Probable L-ascorbate peroxidase 5, chloroplastic OS=Oryza sativa subsp. japonica GN=APX5 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.604e-77
Identity = 142/189 (75.13%), Postives = 160/189 (84.66%), Query Frame = 2
Query:  209 RGYSTVPTTKCAASDPD-QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGK 772
            R  S+  +   AA D + +L++ARED+R+LLKS  CHPILVRLGWHDAGTYDKNI EWP+ GGAN SLRF VEL HAAN GL+ AL L+ PIK KY+GVTYAD+FQLASATAIEEAGGPKIPM YGR DV+  E+CP EGRLPAA PPSPAEHLR VFYRMGL+DKEIVALSGAHT+GR+RPERSGWGK
Sbjct:   35 RPASSSSSAAAAAGDVEAELRAAREDVRQLLKSNPCHPILVRLGWHDAGTYDKNITEWPKCGGANGSLRFGVELVHAANKGLLKALFLVIPIKSKYAGVTYADIFQLASATAIEEAGGPKIPMIYGRADVADGEECPPEGRLPAADPPSPAEHLREVFYRMGLSDKEIVALSGAHTLGRARPERSGWGK 223          
BLAST of CB290849 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.584e-43
Identity = 92/169 (54.44%), Postives = 116/169 (68.64%), Query Frame = 2
Query:  260 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGW 766
            +++ AR D+R L+ S  C PI++RL WHDAGTYDK      + GG N S+RF  E  HAANAG+  A+ L++P+K K+  +TYADL+QLA   A+E  GGP I    GR D S     PEEGRLP A     A HLR VFYRMGL+DK+IVALSG HT+G++RPERSG+
Sbjct:   14 EVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKAT----KTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQKHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSS---DSPEEGRLPDA--KKGAAHLREVFYRMGLSDKDIVALSGGHTLGKARPERSGF 173          
BLAST of CB290849 vs. ExPASy Swiss-Prot
Match: APX3_ORYSI (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. indica GN=APX3 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.757e-43
Identity = 91/169 (53.85%), Postives = 116/169 (68.64%), Query Frame = 2
Query:  260 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGW 766
            +++ AR D+R L+ S  C PI++RL WHDAGTYDK      + GG N S+RF  E  HAANAG+  A+ L++P+K ++  +TYADL+QLA   A+E  GGP I    GR D S     PEEGRLP A     A HLR VFYRMGL+DK+IVALSG HT+G++RPERSG+
Sbjct:   14 EVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKAT----KTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQRHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSS---DSPEEGRLPDA--KKGAAHLREVFYRMGLSDKDIVALSGGHTLGKARPERSGF 173          
BLAST of CB290849 vs. ExPASy Swiss-Prot
Match: APX4_ORYSJ (Probable L-ascorbate peroxidase 4 OS=Oryza sativa subsp. japonica GN=APX4 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.188e-42
Identity = 91/169 (53.85%), Postives = 114/169 (67.46%), Query Frame = 2
Query:  260 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGW 766
            Q+  AR  +R L+ S  C PI++RL WHDAGTYD N     + GGAN S+R+E E  H +NAGL  A+ L++PIK K   +TYADL+QLA   A+E  GGP +    GR D S    CP EGRLP A     A HLR++FYRMGL+DK+IVALSG HT+GR+ PERSG+
Sbjct:   13 QVDRARRHLRALISSKGCAPIMLRLAWHDAGTYDVNT----KTGGANGSIRYEEEYTHGSNAGLKIAIDLLEPIKAKSPKITYADLYQLAGVVAVEVTGGPTVEFIPGRRDSS---VCPREGRLPDA--KKGALHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGF 172          
BLAST of CB290849 vs. ExPASy Swiss-Prot
Match: APX3_ARATH (L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.264e-39
Identity = 86/169 (50.89%), Postives = 111/169 (65.68%), Query Frame = 2
Query:  260 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGW 766
            ++  AR ++R L+ +  C PI++RL WHDAGTYD       + GG N S+R E E  H AN+GL  AL L + +K K+  +TYADL+QLA   A+E  GGP I    GR D      CP+EGRLP A      +HLR+VFYRMGL+DK+IVALSG HT+GR+ PERSG+
Sbjct:   13 EITKARRELRSLIANKNCAPIMLRLAWHDAGTYDAQ----SKTGGPNGSIRNEEEHTHGANSGLKIALDLCEGVKAKHPKITYADLYQLAGVVAVEVTGGPDIVFVPGRKD---SNVCPKEGRLPDA--KQGFQHLRDVFYRMGLSDKDIVALSGGHTLGRAHPERSGF 172          
The following BLAST results are available for this feature:
BLAST of CB290849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
APXS_ARATH9.684e-9181.54L-ascorbate peroxidase S, chloroplastic/mitochondr... [more]
APXT_ARATH4.974e-8777.16L-ascorbate peroxidase T, chloroplastic OS=Arabido... [more]
APX6_ORYSJ2.468e-8683.24Probable L-ascorbate peroxidase 6, chloroplastic O... [more]
APX8_ORYSJ3.564e-8583.62Probable L-ascorbate peroxidase 8, chloroplastic O... [more]
APX7_ORYSJ3.941e-8478.92Probable L-ascorbate peroxidase 7, chloroplastic O... [more]
APX5_ORYSJ1.604e-7775.13Probable L-ascorbate peroxidase 5, chloroplastic O... [more]
APX3_ORYSJ2.584e-4354.44Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX3_ORYSI5.757e-4353.85Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX4_ORYSJ2.188e-4253.85Probable L-ascorbate peroxidase 4 OS=Oryza sativa ... [more]
APX3_ARATH2.264e-3950.89L-ascorbate peroxidase 3, peroxisomal OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dh08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dh08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290849 ID=CB290849; Name=CB290849; organism=Citrus sinensis; type=EST; length=774bp
GCTGCAATCAAAATCACAATCACCGATGGCTTCCTCTTTGAGCACCGCCG
CTTCTTCTCGCCTTCTTTGCTCCACCACCGCCGCCGCCGCAGCTGCTAAG
CTTTCTTTCTCTTCCGCTTCTTCACTCTCTTTCTCTCTCTCCTCTTCTTC
CTCCCTCAAATGCCTCAGATTCTCTCCTCTCATCAGCCAGAGGAGATCGT
CTGTGAACAGAGGATATAGCACCGTACCTACGACGAAATGTGCGGCGTCG
GATCCTGATCAGTTGAAGAGTGCTAGAGAAGATATTAGGGAGCTTCTCAA
GTCTACATTTTGCCATCCTATTTTGGTTCGTCTAGGATGGCATGATGCTG
GTACTTATGACAAGAACATTGAGGAGTGGCCTCGAAGGGGAGGAGCTAAT
GCAAGTCTTAGATTTGAGGTTGAGCTAAAACACGCAGCCAATGCTGGGCT
TGTGAATGCATTGAAACTGATTCAACCTATCAAGGACAAATATTCCGGTG
TCACATATGCAGACTTATTCCAGTTGGCTAGCGCTACTGCTATAGAGGAA
GCCGGGGGTCCTAAGATCCCAATGAAGTATGGAAGAGTGGATGTCTCAGG
ACCTGAGCAGTGCCCTGAAGAAGGAAGGCTTCCTGCTGCTGGGCCTCCAT
CACCTGCTGAACATTTAAGAAATGTCTTTTATAGAATGGGATTAAATGAC
AAGGAAATAGTTGCCTTATCTGGTGCACACACAGTGGGAAGGTCTAGACC
TGAACGAAGTGGTTGGGGCAAGCC
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