CB290897

Overview
NameCB290897
Unique NameCB290897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10187 contig Csv1_Contig10187:256..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB290897 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.607e-11
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = 2 
Query:    2 TTQVKKLMNAYCDRQSVELNSIAFLFDGRRLPXXXXXXXXXXXXXXXXXALLPQTGGALG 181
            +TQ+KKLMNAYCDRQSV++NSIAFLFDGRRL                  A+L QTGG+ G
Sbjct:   37 STQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGSGG 96
The following BLAST results are available for this feature:
BLAST of CB290897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SMT3_ARATH7.607e-1156.67Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290897 ID=CB290897; Name=CB290897; organism=Citrus sinensis; type=EST; length=349bp
AACCACCCAGGTGAAAAAGCTCATGAATGCCTACTGTGATCGGCAGTCAG
TGGAGTTAAACTCTATTGCTTTCTTGTTTGATGGGCGGAGACTCCCATGA
GATCATACTCCAGATGACCTTGATATGGACGATGGAGATGAAATTGATGC
ACTGCTGCCTCAAACTGGAGGTGCGCTTGGAACCAGTTAACTGCAGTGTG
AAATATTTACAGCATCCCTGGCGGACTTGATGTTTGAGTTTTTTAAATTA
ACCTATATCTATGGAAATATTACTGAAAATGATGACTTGGATCTTATAAT
TAACTTGAATTTAAGTCATGGTTTATTATCCACTAAAAAAAAAAAAAAC
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