CB290926
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RH38_ARATH (DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana GN=RH38 PE=2 SV=2) HSP 1 Score: 305.449 bits (781), Expect = 2.095e-82 Identity = 159/250 (63.60%), Postives = 188/250 (75.20%), Query Frame = 1 Query: 7 TEPKRSWGDVAXXXXXXXXXXXXXXXXXXTANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR-PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753 T K+ WGDV +D+ A ++ L+I E +K + L+E EDS+IK VT+GDTPYTSA+ FEDLNLSPEL+KGLYVEMKF+KPSKIQAISLPMI+TPP+++LIAQA NGSGKTTCFVLGMLSRVDP L+ PQALCICPTRELA QN+EVL+KMGK TGIT+E AVP DST P + R PV+A VVIGTPGT+KKWM+ K+LG + LKILV+DEADHML GFRDD Sbjct: 32 TTEKKKWGDV---------------------EDDDDEEEAVSELNSLSIKEEEKPDSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVP-DSTRGAPAATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDD 259
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RH38_ORYSJ (DEAD-box ATP-dependent RNA helicase 38 OS=Oryza sativa subsp. japonica GN=Os03g0158200 PE=3 SV=1) HSP 1 Score: 260.381 bits (664), Expect = 7.729e-69 Identity = 127/191 (66.49%), Postives = 153/191 (80.10%), Query Frame = 1 Query: 181 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753 LD++++S I+ VT+G T Y SA FEDL L+PELLKGL+ EM F +PSKIQA++LPMILTPPY++LIAQA NGSGKTTCFVLGMLSRVDPN K QA+CICPTRELA QN VL +MGK TGIT CA+P +YVPI+K P +T QVVIGT GT+ KW++ KK+ + +KILV+DEADHML E GFR D Sbjct: 78 LDDSDESQIQAVTSGGTVYESAAAFEDLKLTPELLKGLHDEMGFSRPSKIQAVTLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPNRKVTQAICICPTRELAQQNKSVLMRMGKFTGITCACAIPPAQKDYVPIAKMPKITDQVVIGTSGTLMKWINHKKILTNDIKILVFDEADHMLAEDGFRSD 268
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_YEAST (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae GN=DBP5 PE=1 SV=2) HSP 1 Score: 170.244 bits (430), Expect = 1.052e-41 Identity = 96/214 (44.86%), Postives = 136/214 (63.55%), Query Frame = 1 Query: 109 EDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 E+K T + D ++ + KV +A+ +S P SA +F++L L+PELLKG+Y MKFQKPSKIQ +LP++L P RN+IAQ+++G+GKT F L ML+RV+P +PQA+C+ P+RELA Q LEV+++MGK T ITS+ VP K + AQV++GTPGT+ M K + ++KI V DEAD+MLD+ G D Sbjct: 55 EEKKTKQEDSNLISSEYEVKVKLADIQADPNS---------PLYSAKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDS------FEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGD 252
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_YEAS7 (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP5 PE=3 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 1.052e-41 Identity = 96/214 (44.86%), Postives = 136/214 (63.55%), Query Frame = 1 Query: 109 EDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 E+K T + D ++ + KV +A+ +S P SA +F++L L+PELLKG+Y MKFQKPSKIQ +LP++L P RN+IAQ+++G+GKT F L ML+RV+P +PQA+C+ P+RELA Q LEV+++MGK T ITS+ VP K + AQV++GTPGT+ M K + ++KI V DEAD+MLD+ G D Sbjct: 55 EEKKTKQEDSNLISSEYEVKVKLADIQADPNS---------PLYSAKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDS------FEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGD 252
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_KLULA (ATP-dependent RNA helicase DBP5 OS=Kluyveromyces lactis GN=DBP5 PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.343e-41 Identity = 96/222 (43.24%), Postives = 136/222 (61.26%), Query Frame = 1 Query: 106 SEDK-STAELDVEGLTIDESKK---VNKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 SED +T+E VE E+K NK ++ + + ++P S +FE+L LS ELLKGLY MKFQKPSKIQ +LP+++ P N+IAQ+++G+GKT F L ML+RVDPN+ + QA+C+ P RELA Q LEV+++MGK T +S+ VP + P+TA +V+GTPGT+ + K L +K+ V DEAD+MLD+ G D Sbjct: 25 SEDNDTTSETKVEKEDAKETKAEEPANKVINSEYEVKVNLADLQADANSPLYSVKSFEELGLSEELLKGLYA-MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDS------FERNKPITANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGD 239
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_CANAL (ATP-dependent RNA helicase DBP5 OS=Candida albicans GN=DBP5 PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.997e-41 Identity = 90/175 (51.43%), Postives = 120/175 (68.57%), Query Frame = 1 Query: 226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 ++P S +FE+L LSPELLKGLY MKF KPSKIQ +LP++L+ P RN+I Q+++G+GKT F L MLSRVDP +K PQ LC+ PTRELA Q LEV+ MGK T IT++ VP N +P + V AQV++GTPG + ++L S++K+ V DEAD+ML+ G D Sbjct: 143 NSPLYSVKSFEELGLSPELLKGLYA-MKFNKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFSLTMLSRVDPTIKMPQCLCLSPTRELARQTLEVITTMGKFTNITTQLVVP----NAIP--RGSSVNAQVLVGTPGIAIDLIRRRQLNLSKMKVFVLDEADNMLEAQGLGD 310
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_LODEL (ATP-dependent RNA helicase DBP5 OS=Lodderomyces elongisporus GN=DBP5 PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 6.818e-41 Identity = 90/218 (41.28%), Postives = 137/218 (62.84%), Query Frame = 1 Query: 106 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKT---VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 ++DKS +E D+SK+ ++ + +K ++P S +FE+L L PELLKGLY MKF KPSKIQ +LP++++ P +N+I Q+++G+GKT F L MLSRVD ++KAPQ +C+ PTRELA Q LEV+ MGK++ IT + VP + + ++AQV++GTPG + ++ K + +++K+ V DEAD+MLD G D Sbjct: 72 NKDKSQSEAK------DDSKRETNLIENRYEVEVKLDDIQADPNSPLYSVKSFEELGLKPELLKGLYA-MKFNKPSKIQERALPLLISNPPKNMIGQSQSGTGKTAAFSLTMLSRVDESIKAPQCICLAPTRELARQTLEVVETMGKYSNITYQLVVPDS------VPRGQAISAQVLVGTPGIVHDLINRKAINVAKVKVFVLDEADNMLDAQGLAD 276
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_CANGA (ATP-dependent RNA helicase DBP5 OS=Candida glabrata GN=DBP5 PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.163e-40 Identity = 102/247 (41.30%), Postives = 145/247 (58.70%), Query Frame = 1 Query: 97 ANTSEDKSTAEL------------DVEGLTIDE-SKKVNK--FLDEAEDSSIKTVTTG--------------DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 +N++E K+T E+ DVE +E + +VNK DE E+ + + ++P S +F++L LSPELLKG+Y MKFQKPSKIQ +LP++L+ P RN+IAQ+++G+GKT F L MLSRVD PQA+C+ P+RELA Q LEV+++MGK+T IT++ VP K + A VV+GTPGT+ + K + +KI V DEAD+MLD+ G D Sbjct: 35 SNSAETKTTEEVKELKNPFTQKKEDVENDAAEEKTNEVNKDDAKDERENKDTNLIKSEYEVKVNLADLQADPNSPLYSVKSFDELGLSPELLKGIYA-MKFQKPSKIQERALPLLLSNPPRNMIAQSQSGTGKTAAFSLTMLSRVDETQNVPQAICLAPSRELARQTLEVIQEMGKYTKITTQLIVPDS------FEKNTKINANVVVGTPGTLLDLIRRKLIQLQNVKIFVLDEADNMLDKQGLGD 274
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_SCHPO (ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces pombe GN=dbp5 PE=1 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 6.382e-39 Identity = 87/221 (39.37%), Postives = 133/221 (60.18%), Query Frame = 1 Query: 97 ANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 A + +DK+T + + T + + + +K ++P S +FE+L L PELLKG+Y MKFQKPSKIQ +LP++L+ P RN+I Q+++G+GKT F L MLSRVD ++ PQA+C+ P+RELA Q ++V+ +MGK+T + + + + K + AQ+VIGTPGT+ M ++L +K+ V DEAD+MLD+ G D Sbjct: 61 AKSEQDKATNTIAEDANTKQSENDESNLIPNKNEVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIY-SMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDS------VPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGD 274
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_PICST (ATP-dependent RNA helicase DBP5 OS=Pichia stipitis GN=DBP5 PE=3 SV=2) HSP 1 Score: 160.229 bits (404), Expect = 1.089e-38 Identity = 90/218 (41.28%), Postives = 129/218 (59.17%), Query Frame = 1 Query: 106 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 +ED EL G +E K N + + +K ++P S +FE+L L+PELLKGLY MKF KPSKIQ +LP++++ P RN+I Q+++G+GKT F L MLSRVDP + + Q LC+ PTRELA Q LEV+ MGK T IT++ VP + + A +++GTPG + + K++ + +K+ V DEAD+MLD G D Sbjct: 61 AEDAKPEELKEVGKEENEEPKTN-LIQSTYEVKVKLADIQADPNSPLFSVKSFEELGLTPELLKGLYA-MKFNKPSKIQEKALPLLISNPPRNMIGQSQSGTGKTAAFSLTMLSRVDPKVPSTQCLCLAPTRELARQTLEVISTMGKFTNITTQLIVPD------ALPRGSSTNAHIIVGTPGIVMDLIRRKQINVNGVKVFVLDEADNMLDAQGLGD 270 The following BLAST results are available for this feature:
BLAST of CB290926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB290926 ID=CB290926; Name=CB290926; organism=Citrus sinensis; type=EST; length=755bpback to top |