CB290926

Overview
NameCB290926
Unique NameCB290926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290926_ssr39 microsatellite CB290926_ssr39:39..53. BLAST: Citrus ESTs to Prunus persica proteins V1
CB290926_ssr74 microsatellite CB290926_ssr74:74..91. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5898 contig Csv1_Contig5898:180..922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RH38_ARATH (DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana GN=RH38 PE=2 SV=2)

HSP 1 Score: 305.449 bits (781), Expect = 2.095e-82
Identity = 159/250 (63.60%), Postives = 188/250 (75.20%), Query Frame = 1
Query:    7 TEPKRSWGDVAXXXXXXXXXXXXXXXXXXTANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR-PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753
            T  K+ WGDV                        +D+  A  ++  L+I E +K +  L+E EDS+IK VT+GDTPYTSA+ FEDLNLSPEL+KGLYVEMKF+KPSKIQAISLPMI+TPP+++LIAQA NGSGKTTCFVLGMLSRVDP L+ PQALCICPTRELA QN+EVL+KMGK TGIT+E AVP DST   P + R  PV+A VVIGTPGT+KKWM+ K+LG + LKILV+DEADHML   GFRDD
Sbjct:   32 TTEKKKWGDV---------------------EDDDDEEEAVSELNSLSIKEEEKPDSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVP-DSTRGAPAATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDD 259          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RH38_ORYSJ (DEAD-box ATP-dependent RNA helicase 38 OS=Oryza sativa subsp. japonica GN=Os03g0158200 PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 7.729e-69
Identity = 127/191 (66.49%), Postives = 153/191 (80.10%), Query Frame = 1
Query:  181 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753
            LD++++S I+ VT+G T Y SA  FEDL L+PELLKGL+ EM F +PSKIQA++LPMILTPPY++LIAQA NGSGKTTCFVLGMLSRVDPN K  QA+CICPTRELA QN  VL +MGK TGIT  CA+P    +YVPI+K P +T QVVIGT GT+ KW++ KK+  + +KILV+DEADHML E GFR D
Sbjct:   78 LDDSDESQIQAVTSGGTVYESAAAFEDLKLTPELLKGLHDEMGFSRPSKIQAVTLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPNRKVTQAICICPTRELAQQNKSVLMRMGKFTGITCACAIPPAQKDYVPIAKMPKITDQVVIGTSGTLMKWINHKKILTNDIKILVFDEADHMLAEDGFRSD 268          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_YEAST (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae GN=DBP5 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.052e-41
Identity = 96/214 (44.86%), Postives = 136/214 (63.55%), Query Frame = 1
Query:  109 EDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            E+K T + D   ++ +   KV     +A+ +S         P  SA +F++L L+PELLKG+Y  MKFQKPSKIQ  +LP++L  P RN+IAQ+++G+GKT  F L ML+RV+P   +PQA+C+ P+RELA Q LEV+++MGK T ITS+  VP          K   + AQV++GTPGT+   M  K +   ++KI V DEAD+MLD+ G  D
Sbjct:   55 EEKKTKQEDSNLISSEYEVKVKLADIQADPNS---------PLYSAKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDS------FEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGD 252          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_YEAS7 (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP5 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.052e-41
Identity = 96/214 (44.86%), Postives = 136/214 (63.55%), Query Frame = 1
Query:  109 EDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            E+K T + D   ++ +   KV     +A+ +S         P  SA +F++L L+PELLKG+Y  MKFQKPSKIQ  +LP++L  P RN+IAQ+++G+GKT  F L ML+RV+P   +PQA+C+ P+RELA Q LEV+++MGK T ITS+  VP          K   + AQV++GTPGT+   M  K +   ++KI V DEAD+MLD+ G  D
Sbjct:   55 EEKKTKQEDSNLISSEYEVKVKLADIQADPNS---------PLYSAKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDS------FEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGD 252          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_KLULA (ATP-dependent RNA helicase DBP5 OS=Kluyveromyces lactis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.343e-41
Identity = 96/222 (43.24%), Postives = 136/222 (61.26%), Query Frame = 1
Query:  106 SEDK-STAELDVEGLTIDESKK---VNKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            SED  +T+E  VE     E+K     NK ++   +  +         ++P  S  +FE+L LS ELLKGLY  MKFQKPSKIQ  +LP+++  P  N+IAQ+++G+GKT  F L ML+RVDPN+ + QA+C+ P RELA Q LEV+++MGK T  +S+  VP          +  P+TA +V+GTPGT+   +  K L    +K+ V DEAD+MLD+ G  D
Sbjct:   25 SEDNDTTSETKVEKEDAKETKAEEPANKVINSEYEVKVNLADLQADANSPLYSVKSFEELGLSEELLKGLYA-MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDS------FERNKPITANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGD 239          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_CANAL (ATP-dependent RNA helicase DBP5 OS=Candida albicans GN=DBP5 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.997e-41
Identity = 90/175 (51.43%), Postives = 120/175 (68.57%), Query Frame = 1
Query:  226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            ++P  S  +FE+L LSPELLKGLY  MKF KPSKIQ  +LP++L+ P RN+I Q+++G+GKT  F L MLSRVDP +K PQ LC+ PTRELA Q LEV+  MGK T IT++  VP    N +P  +   V AQV++GTPG     +  ++L  S++K+ V DEAD+ML+  G  D
Sbjct:  143 NSPLYSVKSFEELGLSPELLKGLYA-MKFNKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFSLTMLSRVDPTIKMPQCLCLSPTRELARQTLEVITTMGKFTNITTQLVVP----NAIP--RGSSVNAQVLVGTPGIAIDLIRRRQLNLSKMKVFVLDEADNMLEAQGLGD 310          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_LODEL (ATP-dependent RNA helicase DBP5 OS=Lodderomyces elongisporus GN=DBP5 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.818e-41
Identity = 90/218 (41.28%), Postives = 137/218 (62.84%), Query Frame = 1
Query:  106 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKT---VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            ++DKS +E        D+SK+    ++   +  +K        ++P  S  +FE+L L PELLKGLY  MKF KPSKIQ  +LP++++ P +N+I Q+++G+GKT  F L MLSRVD ++KAPQ +C+ PTRELA Q LEV+  MGK++ IT +  VP        + +   ++AQV++GTPG +   ++ K +  +++K+ V DEAD+MLD  G  D
Sbjct:   72 NKDKSQSEAK------DDSKRETNLIENRYEVEVKLDDIQADPNSPLYSVKSFEELGLKPELLKGLYA-MKFNKPSKIQERALPLLISNPPKNMIGQSQSGTGKTAAFSLTMLSRVDESIKAPQCICLAPTRELARQTLEVVETMGKYSNITYQLVVPDS------VPRGQAISAQVLVGTPGIVHDLINRKAINVAKVKVFVLDEADNMLDAQGLAD 276          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_CANGA (ATP-dependent RNA helicase DBP5 OS=Candida glabrata GN=DBP5 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.163e-40
Identity = 102/247 (41.30%), Postives = 145/247 (58.70%), Query Frame = 1
Query:   97 ANTSEDKSTAEL------------DVEGLTIDE-SKKVNK--FLDEAEDSSIKTVTTG--------------DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +N++E K+T E+            DVE    +E + +VNK    DE E+     + +               ++P  S  +F++L LSPELLKG+Y  MKFQKPSKIQ  +LP++L+ P RN+IAQ+++G+GKT  F L MLSRVD     PQA+C+ P+RELA Q LEV+++MGK+T IT++  VP          K   + A VV+GTPGT+   +  K +    +KI V DEAD+MLD+ G  D
Sbjct:   35 SNSAETKTTEEVKELKNPFTQKKEDVENDAAEEKTNEVNKDDAKDERENKDTNLIKSEYEVKVNLADLQADPNSPLYSVKSFDELGLSPELLKGIYA-MKFQKPSKIQERALPLLLSNPPRNMIAQSQSGTGKTAAFSLTMLSRVDETQNVPQAICLAPSRELARQTLEVIQEMGKYTKITTQLIVPDS------FEKNTKINANVVVGTPGTLLDLIRRKLIQLQNVKIFVLDEADNMLDKQGLGD 274          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_SCHPO (ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces pombe GN=dbp5 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.382e-39
Identity = 87/221 (39.37%), Postives = 133/221 (60.18%), Query Frame = 1
Query:   97 ANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            A + +DK+T  +  +  T       +  +    +  +K        ++P  S  +FE+L L PELLKG+Y  MKFQKPSKIQ  +LP++L+ P RN+I Q+++G+GKT  F L MLSRVD ++  PQA+C+ P+RELA Q ++V+ +MGK+T + +   +         + K   + AQ+VIGTPGT+   M  ++L    +K+ V DEAD+MLD+ G  D
Sbjct:   61 AKSEQDKATNTIAEDANTKQSENDESNLIPNKNEVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIY-SMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDS------VPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGD 274          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_PICST (ATP-dependent RNA helicase DBP5 OS=Pichia stipitis GN=DBP5 PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.089e-38
Identity = 90/218 (41.28%), Postives = 129/218 (59.17%), Query Frame = 1
Query:  106 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +ED    EL   G   +E  K N  +    +  +K        ++P  S  +FE+L L+PELLKGLY  MKF KPSKIQ  +LP++++ P RN+I Q+++G+GKT  F L MLSRVDP + + Q LC+ PTRELA Q LEV+  MGK T IT++  VP        + +     A +++GTPG +   +  K++  + +K+ V DEAD+MLD  G  D
Sbjct:   61 AEDAKPEELKEVGKEENEEPKTN-LIQSTYEVKVKLADIQADPNSPLFSVKSFEELGLTPELLKGLYA-MKFNKPSKIQEKALPLLISNPPRNMIGQSQSGTGKTAAFSLTMLSRVDPKVPSTQCLCLAPTRELARQTLEVISTMGKFTNITTQLIVPD------ALPRGSSTNAHIIVGTPGIVMDLIRRKQINVNGVKVFVLDEADNMLDAQGLGD 270          
The following BLAST results are available for this feature:
BLAST of CB290926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH38_ARATH2.095e-8263.60DEAD-box ATP-dependent RNA helicase 38 OS=Arabidop... [more]
RH38_ORYSJ7.729e-6966.49DEAD-box ATP-dependent RNA helicase 38 OS=Oryza sa... [more]
DBP5_YEAST1.052e-4144.86ATP-dependent RNA helicase DBP5 OS=Saccharomyces c... [more]
DBP5_YEAS71.052e-4144.86ATP-dependent RNA helicase DBP5 OS=Saccharomyces c... [more]
DBP5_KLULA2.343e-4143.24ATP-dependent RNA helicase DBP5 OS=Kluyveromyces l... [more]
DBP5_CANAL3.997e-4151.43ATP-dependent RNA helicase DBP5 OS=Candida albican... [more]
DBP5_LODEL6.818e-4141.28ATP-dependent RNA helicase DBP5 OS=Lodderomyces el... [more]
DBP5_CANGA1.163e-4041.30ATP-dependent RNA helicase DBP5 OS=Candida glabrat... [more]
DBP5_SCHPO6.382e-3939.37ATP-dependent RNA helicase dbp5 OS=Schizosaccharom... [more]
DBP5_PICST1.089e-3841.28ATP-dependent RNA helicase DBP5 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ad09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ad09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290926 ID=CB290926; Name=CB290926; organism=Citrus sinensis; type=EST; length=755bp
GCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGCGGAGGAGGAGGA
GGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGCAGCAAACCGCTA
ACACATCTGAGGATAAATCAACGGCGGAACTGGACGTCGAGGGTTTGACT
ATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGAAGCTGAAGACTC
TAGCATCAAAACCGTTACGACTGGTGATACACCTTATACCTCCGCAACTA
CATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAGGGATTATACGTG
GAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCATCAGTTTGCCTAT
GATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGGCACGTAATGGTT
CTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGCCGTGTTGATCCA
AACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTACCAGAGAATTGGC
AATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGCACACAGGGATAA
CTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTATGTGCCAATATCA
AAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCACTCCTGGTACCAT
TAAGAAATGGATGTCAGCAAAGAAATTGGGTTTCAGTCGCTTGAAAATTC
TTGTGTATGATGAGGCCGATCACATGCTTGATGAGGCTGGCTTTAGAGAT
GATTC
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