CB290936

Overview
NameCB290936
Unique NameCB290936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: AL2C4_ARATH (Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.034e-61
Identity = 115/189 (60.85%), Postives = 141/189 (74.60%), Query Frame = -3
Query:  129 GIFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIFNFPWV 695
            GI+D+  +KLVEKAK W VGDPFD   RQGPQVDK+QF++I  +IEHGK EGA LLT           I+P IF +V+EDM I + EIFGPVM+LMKFKTV E IK ANNT+YGLAAGI+++ + + NTV RSI AGIIW+NC+F FD DCP+GGYK SG  R+ G++   NYLQ KSVV P+ N PW+
Sbjct:  313 GIYDKVVEKLVEKAKDWTVGDPFDSTARQGPQVDKRQFEKILSYIEHGKNEGATLLTGGKAIGDKGYFIQPTIFADVTEDMKIYQDEIFGPVMSLMKFKTVEEGIKCANNTKYGLAAGILSQDIDLINTVSRSIKAGIIWVNCYFGFDLDCPYGGYKMSGNCRESGMDALDNYLQTKSVVMPLHNSPWM 501          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: ALDH2_MACPR (Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=Macroscelides proboscideus PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.314e-45
Identity = 90/182 (49.45%), Postives = 121/182 (66.48%), Query Frame = -3
Query:  147 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPI 692
            I+DEF ++ VE+AK +V+G+P  P V QGPQ+DK+Q+D+I   IE GK+EGA L             I+P +F NV+++M IAK+EIFGPV  +MKFK++ E IK ANNT YGLAAG+ TK L    TV  ++ AG +W+NC+ A    CPFGG+K SG GR+ G    H Y +VK+V   I
Sbjct:   54 IYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYDKIIDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDEVIKRANNTFYGLAAGVFTKDLDKAVTVSAALQAGTVWVNCYMANSVQCPFGGFKMSGNGRELGEYGLHEYTEVKTVTMKI 235          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 180.644 bits (457), Expect = 6.732e-45
Identity = 85/182 (46.70%), Postives = 120/182 (65.93%), Query Frame = -3
Query:  147 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPI 692
            ++DEF K+ VE+AK +V+G+P  P + QGPQ+DK+Q D+I   IE GK+EGA L             ++P +F NV+++M IAK+EIFGPV  +MKFK+V + IK ANNT YGLAAG+ TK L    TV  ++ AG++W+NC+      CPFGG+K SG GR+ G    + Y ++K+V   I
Sbjct:  315 VYDEFVKRSVERAKKYVLGNPLTPGINQGPQIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSVDDVIKRANNTTYGLAAGLFTKDLDKAITVSSALQAGVVWVNCYMMLSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAMKI 496          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.732e-45
Identity = 88/182 (48.35%), Postives = 118/182 (64.84%), Query Frame = -3
Query:  147 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPI 692
            I+DEF ++ +E+AK + +GDP  P V+QGPQ+DK+QF +I   IE GK+EGA L             I+P +F NV++DM IAK+EIFGPV  +MKFKT+ E IK ANNT YGLAA + TK +    T   ++ AG +W+NC+ AF   CPFGG+K SG GR+ G      Y +VK+V   I
Sbjct:  323 IYDEFVRRSIERAKKYTLGDPLLPGVQQGPQIDKEQFQKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVTDDMRIAKEEIFGPVQQIMKFKTIDEVIKRANNTTYGLAAAVFTKDIDKALTFASALQAGTVWVNCYSAFSAQCPFGGFKMSGNGRELGEYGLQEYTEVKTVTIKI 504          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.792e-45
Identity = 89/182 (48.90%), Postives = 119/182 (65.38%), Query Frame = -3
Query:  147 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPI 692
            I+DEF ++ VE+AK +V+G+P  P V QGPQ+DK+Q+D+I   IE GK+EGA L             I+P +F NVS++M IAK+EIFGPV  +MKFK++ + IK ANNT YGL AG  TK L    TV  ++ AG +W+NC+      CPFGG+K SG GR+ G   FH Y +VK+V   I
Sbjct:  314 IYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVSDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTTYGLFAGSFTKDLDKAITVSAALQAGTVWVNCYGVVSAQCPFGGFKMSGNGREMGEYGFHEYTEVKTVTVKI 495          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.148e-44
Identity = 84/182 (46.15%), Postives = 121/182 (66.48%), Query Frame = -3
Query:  147 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPI 692
            I+DEF ++ VE+AK +++G+P  P V QGPQ+DK+Q+D+I   IE GK+EGA L             ++P +F NV+++M IAK+EIFGPV  +MKFK++ + IK ANNT YGL+AG+ TK +    T+  ++ AG +W+NC+      CPFGG+K SG GR+ G   FH Y +VK+V   I
Sbjct:  315 IYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVWVNCYGVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTVTVKI 496          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.500e-44
Identity = 88/188 (46.81%), Postives = 119/188 (63.30%), Query Frame = -3
Query:  129 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIFNFPWV 692
            ++DEF +K   +A   VVGDPF   + QGPQ+D KQF+++  +I+ G    A L             I+P +F NV +DMLIA+ EIFGPV +++KF  V E IK AN T+YGLAAG+ TK L   N V R++ AG +W+NCF  FD   PFGGYK SG GR+ G+   +NYLQ+K+VVT +    W+
Sbjct:  351 VYDEFVEKSKARALKRVVGDPFRKGIEQGPQIDLKQFEKVMKYIKSGIESNATLECGGDQIGDKGYFIQPTVFSNVKDDMLIAQDEIFGPVQSILKFSDVDEVIKRANETKYGLAAGVFTKNLDTANRVSRALKAGTVWVNCFDVFDAAIPFGGYKMSGNGREKGIYSLNNYLQIKAVVTALNKPAWI 538          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 7.443e-44
Identity = 83/182 (45.60%), Postives = 119/182 (65.38%), Query Frame = -3
Query:  147 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPI 692
            ++DEF +K VE+AK +V+G+P    + QGPQ+DK+Q D+I   IE GK+EGA L             ++P +F NV+++M IAK+EIFGPV  +MKFK++ + IK ANNT YGLAAG+ TK L    TV  ++ AG++W+NC+      CPFGG+K SG GR+ G    + Y ++K+V   I
Sbjct:  315 VYDEFVRKSVERAKKYVLGNPLTQGINQGPQIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSIDDVIKRANNTTYGLAAGVFTKDLDRAITVSSALQAGVVWVNCYMILSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAMKI 496          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: AL2B7_ARATH (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.270e-43
Identity = 86/188 (45.74%), Postives = 118/188 (62.77%), Query Frame = -3
Query:  129 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIFNFPWV 692
            ++DEF +K   +A    VGDPF   + QGPQVD +QF++I  +I+HG   GA L             I+P +F +V +DMLIA  EIFGPV  ++KFK + E I  ANN++YGLAAG+ T+ L   + + R++  G +WINCF   D   PFGGYK SG GR+ G+   +NYLQVK+VVT + N  W+
Sbjct:  347 VYDEFVEKAKARALKRNVGDPFKSGIEQGPQVDSEQFNKILKYIKHGVEAGATLQAGGDRLGSKGYYIQPTVFSDVKDDMLIATDEIFGPVQTILKFKDLDEVIARANNSRYGLAAGVFTQNLDTAHRLMRALRVGTVWINCFDVLDASIPFGGYKMSGIGREKGIYSLNNYLQVKAVVTSLKNPAWL 534          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.658e-43
Identity = 85/182 (46.70%), Postives = 120/182 (65.93%), Query Frame = -3
Query:  147 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPI 692
            I+DEF ++ VE+AK +V+G+P  P V QGPQ+DK+Q+++I   IE GK+EGA L             I+P +F +V++DM IAK+EIFGPV  +MKFK++ + IK ANNT YGL+AGI T  +    TV  ++ +G +W+NC+      CPFGG+K SG GR+ G   FH Y +VK+V   I
Sbjct:  315 IYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTVTIKI 496          
The following BLAST results are available for this feature:
BLAST of CB290936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
AL2C4_ARATH1.034e-6160.85Aldehyde dehydrogenase family 2 member C4 OS=Arabi... [more]
ALDH2_MACPR2.314e-4549.45Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=... [more]
AL1A1_MOUSE6.732e-4546.70Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
AL1A1_CHICK6.732e-4548.35Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
AL1A1_HORSE8.792e-4548.90Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
AL1A1_HUMAN1.148e-4446.15Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
AL2B4_ARATH1.500e-4446.81Aldehyde dehydrogenase family 2 member B4, mitocho... [more]
AL1A1_RAT7.443e-4445.60Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
AL2B7_ARATH1.270e-4345.74Aldehyde dehydrogenase family 2 member B7, mitocho... [more]
AL1A1_SHEEP1.658e-4346.70Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ae03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ae03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290936 ID=CB290936; Name=CB290936; organism=Citrus sinensis; type=EST; length=697bp
AATACAAAAACCCTTGTATTTTATGAAAGCCTTTAAATGAAAATAATTTG
CAAACCCCAAACTCAAAAAGTCTTGCAATTTTAATCAGCCACCACTTATT
TTTTCAAACCGGGGGGGGGAAGGGTTCCCACCCAAGGAAAATTGAAAATG
GGAGTCACAACGGACTTGACCTGCAAATAGTTATGAAAAAATTCCAGTCC
ACAGTCTCTACCAAATCCACTCTTTTTGTATCCTCCGAAAGGGCAGTCCC
TGTCAAAAGCAAAAAAACAATTGATCCATATAATGCCTGCTCAAATTGAT
CTAAAAACGGTATTACCCACTTTCAGGGCCTTTGTCATAATGCCTGCTGC
TAGGCCATATTGGGTATTATTTGCACTCTTAATTGCCTCCCCAACAGTCT
TGAATTTCATCAAGGCCATCACAGGGCCAAAAATTTCTTTCTTTGCTATC
AGCATGTCTTCCGAAACATTTGGGAAAATTGGAGGCTCAATATAATACCC
CTTCTTGCCAATAGGCTTACCCCCTGTTAACAAGGGGGCTCCTTCCCTCT
TGCCATGCTCAATGAACAAAAAAATTCTATCAAACTGCTTCTTATCAACC
TGGGGTCCTTGACGAACTGCAGGATCAAAAGGATCCCCAACTACCCAAGC
TTTTGCCTTTTCGACCAACTTCTTTTCAAATTCATCAAAAATTCCTT
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