CB290938

Overview
NameCB290938
Unique NameCB290938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290938 vs. ExPASy Swiss-Prot
Match: BMS1_HUMAN (Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.306e-36
Identity = 45/65 (69.23%), Postives = 54/65 (83.08%), Query Frame = -2
Query:  420 RLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAP 614
            RLK+HRW+ KK+LKSRDPI  S+GWRR QT+P+Y IED NGR R+LKYTP+HMH  A FWGP+ P
Sbjct:  925 RLKKHRWY-KKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWGPITP 988          

HSP 2 Score: 66.2402 bits (160), Expect = 4.306e-36
Identity = 30/66 (45.45%), Postives = 47/66 (71.21%), Query Frame = -1
Query:  607 QMNIAELNDLDEVTRI--EGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQVK 798
            Q+N AE  D D+  R+  EGF+ G Y+ +EI +VP E V+ FDP +P+++GG+G  + NVGY+Q++
Sbjct:  860 QLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGYVQMR 925          
BLAST of CB290938 vs. ExPASy Swiss-Prot
Match: BMS1_SCHPO (Ribosome biogenesis protein BMS1 homolog OS=Schizosaccharomyces pombe GN=SPBC31E1.06 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.437e-32
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = -2
Query:  345 RLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFIQQSD*A*FSSNGAF 614
            R+K+HRW HKK+LK+ DP+  S+GWRR Q++PVY+I D   R+RMLKYTPEHMH    F+GP   P    C  + +  S    F+  G+F
Sbjct:  765 RIKRHRW-HKKILKTNDPLIFSMGWRRFQSIPVYSISDSRTRNRMLKYTPEHMHCFGTFYGPFVAPNSGFCAVQSVANS----FAKAGSF 849          

HSP 2 Score: 61.2326 bits (147), Expect = 3.437e-32
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  607 LDWLT--RLNFAKQM--NIAELNDLDEVTR--IEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQVK 831
            +DW T  +   A+Q+  N     D+D  +R  IEG++ GTY+ + I+DVPFE VE+FD  +PV+VGG+   +Q  G +QV+
Sbjct:  685 VDWYTEEKEKIARQLVINREAFEDMDPESRAEIEGYRAGTYVRIVINDVPFEFVEHFDSRYPVVVGGLLPNEQRYGLVQVR 765          
BLAST of CB290938 vs. ExPASy Swiss-Prot
Match: YO021_HUMAN (Putative BMS1-like protein ENSP00000383088 OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.415e-27
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = -2
Query:  435 RLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFW 614
            RLK+HRW+ KK+LKSRDPI  S+GWRR QT+P+Y IED NGR R+LKYTP+HMH  A FW
Sbjct:   42 RLKKHRWY-KKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFW 100          

HSP 2 Score: 46.2098 bits (108), Expect = 1.415e-27
Identity = 18/41 (43.90%), Postives = 31/41 (75.61%), Query Frame = -1
Query:  607 YLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQVK 729
            Y+ +EI +VP E V+  DP +P+++GG+G  + NVGY+Q++
Sbjct:    2 YVRVEIENVPCEFVQNIDPHYPIILGGLGNSEGNVGYVQMR 42          
BLAST of CB290938 vs. ExPASy Swiss-Prot
Match: YO022_HUMAN (Putative BMS1-like protein ENSP00000383048 OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.980e-26
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = -2
Query:  435 LKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFW 611
            LK+HRW+ KK+LKSRDPI  S+GWRR QT+P+Y IED NGR R+LKYTP+HMH  A FW
Sbjct:   43 LKKHRWY-KKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFW 100          

HSP 2 Score: 44.2838 bits (103), Expect = 1.980e-26
Identity = 17/40 (42.50%), Postives = 30/40 (75.00%), Query Frame = -1
Query:  610 YLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQV 729
            Y+ +EI +VP E V+  DP +P+++GG+G  + NVGY+++
Sbjct:    2 YVRVEIENVPCEFVQNIDPHYPIILGGLGNSEGNVGYVEM 41          
BLAST of CB290938 vs. ExPASy Swiss-Prot
Match: YI027_HUMAN (Putative BMS1-like protein ENSP00000382360 OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.255e-25
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = -2
Query:  435 RLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFW 614
            RLK+HRW+ KK+LKS+DPI  S+GWRR QT+ +Y IED NGR R+LKYTP+H+H  A FW
Sbjct:   42 RLKKHRWY-KKILKSQDPIIFSVGWRRFQTILLYYIEDHNGRQRLLKYTPQHIHCGAAFW 100          

HSP 2 Score: 46.595 bits (109), Expect = 1.255e-25
Identity = 18/41 (43.90%), Postives = 32/41 (78.05%), Query Frame = -1
Query:  607 YLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQVK 729
            Y+ +EI +VP E V+ FDP +P+++GG+G  + NVG++Q++
Sbjct:    2 YVRVEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGHVQMR 42          
BLAST of CB290938 vs. ExPASy Swiss-Prot
Match: BMS1_YEAST (Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae GN=BMS1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.349e-25
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = -2
Query:  375 RLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFIQQSD 614
            RL++HRW HKK+LK+ DP+ +S+GWRR QT+P+Y   D   R RMLKYTPEH +  A F+GPL  P    C  + +  SD
Sbjct:  828 RLRRHRW-HKKILKTNDPLVLSLGWRRFQTLPIYTTTDSRTRTRMLKYTPEHTYCNAAFYGPLCSPNTPFCGVQIVANSD 906          

HSP 2 Score: 42.3578 bits (98), Expect = 4.349e-25
Identity = 22/64 (34.38%), Postives = 38/64 (59.38%), Query Frame = -1
Query:  646 LTRLNFAKQMNIAELNDLDEVT-----RIEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGI 822
            L +   +KQ+ I  + +  E+T     RIEGF+ G+Y+ +    VP E V+ F+P  P+++GG+
Sbjct:  753 LQKAKISKQLEINNI-EYQEMTPEQRQRIEGFKAGSYVRIVFEKVPMEFVKNFNPKFPIVMGGL 815          
The following BLAST results are available for this feature:
BLAST of CB290938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
BMS1_HUMAN4.306e-3669.23Ribosome biogenesis protein BMS1 homolog OS=Homo s... [more]
BMS1_SCHPO3.437e-3248.89Ribosome biogenesis protein BMS1 homolog OS=Schizo... [more]
YO021_HUMAN1.415e-2770.00Putative BMS1-like protein ENSP00000383088 OS=Homo... [more]
YO022_HUMAN1.980e-2669.49Putative BMS1-like protein ENSP00000383048 OS=Homo... [more]
YI027_HUMAN1.255e-2565.00Putative BMS1-like protein ENSP00000382360 OS=Homo... [more]
BMS1_YEAST4.349e-2551.25Ribosome biogenesis protein BMS1 OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02ae04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ae04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290938 ID=CB290938; Name=CB290938; organism=Citrus sinensis; type=EST; length=918bp
TTTTTTTTTTTTTTTTATTTTAAAGGATATGAATCTATTTATACCAACTA
GTTTTACACTTGTCTAAAACTTAGATATGTAATTGCATTACATGATCTAA
GAGTATTTAAACTCTCATATGAATAAAGTTTTCCATTAATTCCTAAATTT
TGAGATAACCTAATAGTTCTTCATCCTGCTACCAAAATTATTCCTCCCAA
GATATAGAAAGAAAGATGTGTCTATCCTTTCAAAAAGCAAAAGATGGAAA
GACGTGCATATCTCTACATATCTTCTCTTTTCTTTGGGCTTTGGCCACGT
CTAGGTGCCACTTGGAAACCAAATCCCTCCATTTGTCTTCTAGCAAATGC
ACCGTTGGATGAAAATCAAGCTCAGTCTGATTGTTGGATAAATTTTGGAC
AGCAACTACGCATCTGAGGCGGGGCAAGAGGACCCCAGAACATGGCAAGG
CTATGCATGTGTTCTGGAGTGTACTTCAGCATGCGATGCCGCCCATTACG
GTCCTCTATGGCATAAACAGGGACGGTTTGGATACGCCTCCATCCAATAG
AAACAAAAATGGGATCTCTACTCTTGAGTACCTTCTTGTGCCACCATCTG
TGTTGCTTTAACCTGCATGTATCCAACATTTTGCTTGCCAAGACCAATTC
CTCCAACCAAAACAGGATGGCAAGGATCAAAATATTCAACCATCTCAAAA
GGAACATCATGTATCTCCATTCCAAGATATGTTCCTGTTTGAAAGCCCTC
TATTCGAGTGACCTCGTCGAGATCATTGAGCTCAGCTATATTCATTTGTT
TTGCAAAATTCAATCTTGTCAACCAGTCCAATTTCGTTAGGCTGGACACA
ATGAAACTTTGCCACATCTTTTTCATGCATTTCCTGCTCAAGAGATTCAG
ATGCATCATATGTAAATC
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