CB290955

Overview
NameCB290955
Unique NameCB290955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12709 contig Csv1_Contig12709:1068..1711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.095e-57
Identity = 108/199 (54.27%), Postives = 144/199 (72.36%), Query Frame = -3
Query:   50 LGFPYLCGIDALFNEGVNFPPLKQ*GFWNTLLPRLVKAIEDS-GDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNGKPQWKQVFLPSWHSTE 643
            L FP    ID LF +GV  P +++ GF ++++PRL++ + DS GD I LF+ P  + +DKF W RDEEF R+TL G+NPY+I L+ E PLKS LD  +YGP ESAIT +L+ +++  +++VEEAI QK+LF LD+HDLFLPYV K+R LK TT+YGS  IFFLT  GTLR + IELT P    +PQW+QVF PS  +T+
Sbjct:  376 LPFPSFFVIDKLFEDGVELPGVEKLGFLHSIVPRLLELLRDSPGDKILLFDTPANVQKDKFAWLRDEEFARETLAGINPYAIELVREFPLKSKLDPAVYGPAESAITADLLEEQMRRVMTVEEAISQKRLFMLDFHDLFLPYVHKIRSLKHTTMYGSRTIFFLTDDGTLRLLAIELTRPASPSQPQWRQVFTPSTDTTK 574          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.062e-54
Identity = 106/197 (53.81%), Postives = 138/197 (70.05%), Query Frame = -3
Query:   47 FPYLCGIDALFNEGVNFPPLKQ*GFWNTLLPRLVKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNGKPQWKQVFLPSWHSTEC 637
            FP+   I  LF EG+  P  K  G    LLPR++KA+ ++ D+I  F+ PV ++RD+F W RD+EF RQTL GLNPYSI+L+ E PL S LD  +YG P S IT E++ +E+ G ++V+EA+K K+LF LDYHDL LPYV KVR+L +TTLY S  +FFL+   TLRP+ IELT PP   KPQWKQVF P + +T C
Sbjct:  338 FPHFKAIQNLFEEGIQLP--KDAGLL-PLLPRIIKALGEAQDDILQFDAPVLINRDRFSWLRDDEFARQTLAGLNPYSIQLVEEWPLISKLDPAVYGDPTSLITWEIVEREVKGNMTVDEALKNKRLFVLDYHDLLLPYVNKVRELNNTTLYASRTLFFLSDDSTLRPVAIELTCPPNINKPQWKQVFTPGYDATSC 531          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.696e-52
Identity = 101/198 (51.01%), Postives = 137/198 (69.19%), Query Frame = -3
Query:   53 LGFPYLCGIDALFNEGVNFPPLKQ*GFWNTLLPRLVKAIEDS-GDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNGKPQWKQVFLPSWHST 643
            L FP    ID LF +GV  P + +  F  +++PRL++ + D+  + I  FE P  + +DKF W RDEEF R+TL G+NPY+I L+ E PLKS LD  +YGP ESAIT +L+ +++  +++VEEAI QK+LF LD+HDLFLPYV K+R L  TT+YGS  +FFLT  GTL+ + IELT P    +PQW+QVF PS  +T
Sbjct:  359 LPFPSFFVIDKLFEDGVELPGVDKLNFLESVVPRLLEHLRDTPAEKILRFETPANIQKDKFAWLRDEEFARETLAGINPYAIELVREFPLKSKLDPAVYGPAESAITADLLEEQMRRVMTVEEAISQKRLFMLDFHDLFLPYVHKIRSLDHTTMYGSRTVFFLTDDGTLQLLAIELTRPASPSQPQWRQVFTPSTDAT 556          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.199e-51
Identity = 100/201 (49.75%), Postives = 138/201 (68.66%), Query Frame = -3
Query:   50 GFPYLCGIDALFNEGVNFPPLKQ*G----FWNTLLPRLVKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNGKPQWKQVFLPSWHSTE 640
            GF +   IDAL+++G+  P     G      N ++PR+V+ IED+ +++  FE P  ++RD+F WFRDEEF RQTL GLNP  IR +TE P+ S LD  +YGP ESA++ E++ K + G ++VEEA+++K+LF LDYHD+FLPYV +VR+L  TTLYGS  +FFL+  GTL P+ IELT P    KPQWK+ F     +TE
Sbjct:  332 GFSHFPAIDALYSDGIPLPVDGHGGNSFNVINDVIPRVVQMIEDTTEHVLRFEVPEMLERDRFSWFRDEEFARQTLAGLNPICIRRLTEFPIVSKLDPAVYGPAESALSKEILEKMMNGRMTVEEAMEKKRLFLLDYHDVFLPYVHRVRELPDTTLYGSRTVFFLSDEGTLMPLAIELTRPQSPTKPQWKRAFTHGSDATE 532          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.647e-48
Identity = 102/202 (50.50%), Postives = 128/202 (63.37%), Query Frame = -3
Query:   68 FPYLCGIDALFNEGVNFPPLKQ*G--------FWNTLLPRLVK----AIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNGKPQWKQVFLP 637
            FP L  ID L+++     P++  G           T L  L K    A  +    +F FE P   DRDKF WFRDEEF RQT+ G+NP SI+L+TE P+KS LD   YGP +S IT E++ ++I  +++ +EA++ KKLF LDYHDL LPYV KVR+L  TTLYGS  +FFLT  GTLRPI IELT P    KPQW+QVF P
Sbjct:  354 FPSLSAIDQLYDDNFRNQPVQPEGGKLRFVIDLLETELLHLFKLEGAAFLEGIRRVFKFETPEIHDRDKFAWFRDEEFARQTIAGMNPMSIQLVTEFPIKSNLDEATYGPADSLITKEVVEEQIRRVMTADEAVQNKKLFMLDYHDLLLPYVHKVRKLDGTTLYGSRALFFLTADGTLRPIAIELTRPKSKKKPQWRQVFTP 555          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.843e-45
Identity = 99/202 (49.01%), Postives = 125/202 (61.88%), Query Frame = -3
Query:   68 FPYLCGIDALFNEGVNFPPLKQ*G-----FWNTLLPRLVKAIEDSGDN-------IFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNGKPQWKQVFLP 637
            FP L  IDAL+++     P++  G       + L   LV  ++  G         +F FE P   D DK  WFRDEEF RQTL G+NP SI+L+TE P+ S LD   YGP +S IT ELI K+I  +++ EEA+ QKKLF LDYHDL LPYV +VR+L + T+YGS  +FFL   GTLRPI IELT P    K QW++VF P
Sbjct:  353 FPTLASIDALYDDDFRNQPVQPEGGKVRLILDLLAKELVHLVKLEGAEFVEGIRRVFKFETPEIHDMDKLAWFRDEEFARQTLAGMNPLSIQLVTELPIVSKLDELKYGPADSLITKELIEKQINRIMTAEEAVAQKKLFMLDYHDLLLPYVHRVRKLDNKTMYGSRTLFFLADDGTLRPIAIELTRPKSPHKQQWRKVFTP 554          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 9.351e-35
Identity = 80/192 (41.67%), Postives = 121/192 (63.02%), Query Frame = -3
Query:   53 IDALFNEGVNFPPLKQ*GFWNTLLPRL--VKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPM-NGKPQWKQVFLPSWHST 619
            +D LF EG+    LKQ    + L  ++  V+ I+++ + +  ++ P  + +DKF W RD+EF RQ L G+NP +I  +   P  S LD  +YGPPESAIT E I+  + GM SV+EA++  +L+ LDYHD+FLP+++++        YG+  +FFLT +GTL+PI IEL  PPM +G  + K+VF P   +T
Sbjct:  348 VDNLFKEGLR---LKQ-ALHDQLFQKIPFVRKIQENSEGLLRYDTPDIIKKDKFAWLRDDEFARQALAGINPVNIERLQAFPPVSKLDPAVYGPPESAITEEHIIGHLDGM-SVQEAVEGSRLYMLDYHDIFLPFLDRINAQDGRKAYGTRAVFFLTAAGTLKPIAIELCLPPMTDGCKRAKRVFTPPADAT 534          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 9.676e-32
Identity = 72/190 (37.89%), Postives = 115/190 (60.53%), Query Frame = -3
Query:   53 IDALFNEGVNFPPLKQ*GFWNTLLPRLVKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELT-PPPMNGKPQWKQVFLPSWHST 619
            ID L+ EG+      Q   +  +   LV+ I++S + +  ++ P  + +DKF W RD+EF RQ + G+NP +I  +   P  S LD  IYGPPES+IT   I   + G ++V++A+ + KLF +DYHD +LP+++++  +     Y +  IFFLT +GTL+PI IEL+ PP   G+P+  +V  P + +T
Sbjct:  362 IDNLYKEGLRLKLGLQEHLFQKI--PLVQKIQESSEGMLRYDTPSILSKDKFAWLRDDEFARQAVAGINPVNIERLQVFPPVSKLDPAIYGPPESSITETHIAGHLNG-LTVQQAMDEAKLFIVDYHDAYLPFLDRINAIDGRKAYATRTIFFLTEAGTLKPIAIELSLPPAKPGEPRPSKVLTPPYDAT 548          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.397e-30
Identity = 72/195 (36.92%), Postives = 117/195 (60.00%), Query Frame = -3
Query:   53 IDALFNEGVNFPPLKQ*GFWNTL-----LPRLV-KAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNGKPQWKQVFLPSWHST 619
            ID L+ EG+    L + GF + +     LP++V   +++S   +  ++ P  + +DK  W RD+EF RQ + G+NP +I  +   P  S LD +IYGP  SA+T + I+  + G  SV++A+++ +L+ LDYHD+FLP+++++  L     Y +  IFFLT  GTL+P+ IEL+ PP   K + K+V  P   +T
Sbjct:  364 IDRLYKEGL----LLKLGFQDDIFKKFPLPKVVVDTLQESTKGLLKYDTPKILSKDKNAWLRDDEFARQAIAGINPVNIERVKTFPPVSNLDPKIYGPQHSALTDDHIIGHLDGF-SVQQALEENRLYMLDYHDIFLPFLDRINALDGRKAYATRTIFFLTRLGTLKPVAIELSLPPHGPKHRSKRVLTPPVDAT 553          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.057e-30
Identity = 71/196 (36.22%), Postives = 119/196 (60.71%), Query Frame = -3
Query:   53 IDALFNEGVNFPPLKQ*GFWNTL-----LPRLVKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPP-ESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNGKPQ-WKQVFLPSWHST 619
            ID+L+ EG+    L + GF + +     LP++V  ++ S + +  ++ P  + +DK+ W RD+EF RQ + G+NP +I  +T  P  S LD EIYGP   SA+T + I+ ++ G ++V++A++  +LF +DYHD++LP+++++  L     Y +  I FLT  GTL+PI IEL+ P  +   Q  K+V  P   +T
Sbjct:  370 IDSLYKEGL----LLKLGFQDDMFKKFPLPKIVTTLQKSSEGLLRYDTPKIVSKDKYAWLRDDEFARQAIAGINPVNIERVTSYPPVSNLDPEIYGPGLHSALTEDHIIGQLDG-LTVQQALETNRLFMVDYHDIYLPFLDRINALDGRKAYATRTILFLTRLGTLKPIAIELSLPSQSSSNQKSKRVVTPPVDAT 560          
The following BLAST results are available for this feature:
BLAST of CB290955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOXC2_ORYSJ5.095e-5754.27Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX2_ARATH1.062e-5453.81Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOXC1_ORYSJ1.696e-5251.01Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX23_HORVU3.199e-5149.75Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX21_HORVU5.647e-4850.50Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX22_HORVU5.843e-4549.01Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX5_ORYSJ9.351e-3541.67Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ9.676e-3237.89Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX3_ARATH1.397e-3036.92Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX4_ARATH9.057e-3036.22Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02af02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02af02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290955 ID=CB290955; Name=CB290955; organism=Citrus sinensis; type=EST; length=645bp
CAGCATGATGAGCAAGGACATGAGCTTTTGCTAACTTCCAAAGCCAGCAC
TCAGTAGAGTGCCAAGAAGGTAAAAACACTTGTTTCCATTGTGGCTTGCC
ATTCATTGGAGGCGGAGTGAGCTCAATATTTATTGGTCTCAATGTGCCGG
ATGGTGTTAGGAAAAAAATTGGGCTAGATCCATACAAAGTTGTGCTTTTG
AGTTGTCTCACTTTTTCCACATATGGTAAAAATAGGTCATGGTAATCTAA
AAAGAACAACTTCTTTTGTTTTATAGCCTCTTCAACAGAAATCATTCCTC
CAATTTCTTTTAAAATCAATTCTGGGGTAATTGCTGATTCTGGTGGGCCG
TAAATTTCAAGATCGAGGGTGCTTTTCAACGGCGATTCCGTGATCAACCT
TATGCTATACGGGTTGAGACCATCAAGAGTTTGCCTAAAAAATTCCTCAT
CCCTAAACCAAAAAAATTTGTCTCTGTCCATTGTTACAGGCGGCTCAAAC
AGAAAAATATTATCTCCTGAATCCTCAATTGCCTTAACCAATCTGGGAAG
CAGGGTGTTCCAAAAACCTTACTGTTTGAGTGGAGGAAAGTTGACTCCTT
CATTGAAGAGTGCGTCAATACCACATAAGTATGGAAACCCCAAAT
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