CB290980

Overview
NameCB290980
Unique NameCB290980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig161 contig Csv1_Contig161:1..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290980 vs. ExPASy Swiss-Prot
Match: ATPO_IPOBA (ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.680e-49
Identity = 105/179 (58.66%), Postives = 131/179 (73.18%), Query Frame = 1
Query:  118 MATVSPIRS-SLSVFNKIL----KSNSQLSPLHPQLS-----KGFSTSSLQKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKAESEILDLDEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTNHFLVVLADNGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLP 624
            MA     RS   S+  K L    +SN+  S L P LS     + ++T+S  KEQK+KVPL ++G SGNYASALY+AAVK+N LEK ESE+ DL EASKK+ T+ QF +D SVP +TRVNAI EIC QAKF D T +FL++LA+NGRL+++D I KRF ELTMAH+GEVK TVT+VIPLP
Sbjct:    1 MAMTGRARSMGFSILQKALSSAQRSNAHRSILCPTLSNSELLRNYATASASKEQKIKVPLTMYGVSGNYASALYLAAVKSNTLEKVESELYDLVEASKKSPTFSQFMRDPSVPVDTRVNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIVKRFKELTMAHRGEVKATVTTVIPLP 179          
BLAST of CB290980 vs. ExPASy Swiss-Prot
Match: ATPO_ARATH (ATP synthase subunit O, mitochondrial OS=Arabidopsis thaliana GN=At5g13450 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 6.512e-38
Identity = 86/166 (51.81%), Postives = 118/166 (71.08%), Query Frame = 1
Query:  139 RSSLSVFNKILKSNSQLS----PLHPQLSKGFSTSSLQKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKAESEILDLDEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTNHFLVVLADNGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLP 624
            RS +S F  I  ++S  S     L P L + ++T+S Q    VKVP+AL G +GN+AS LYIAAVK N+LEK E+++ ++ EA K A  + QFTKD SVP  TR+ AI + C QAKF++ T +FL +LA+NG+L+NLD I K+F++LT AH+G+VKV VT+VIPLP
Sbjct:    6 RSGISFFKTIAVTDSVSSVRSKSLFPAL-RTYATASAQTTANVKVPIALVGENGNFASWLYIAAVKMNSLEKIETDLSEMIEAMKTAPIFAQFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIPLP 170          
BLAST of CB290980 vs. ExPASy Swiss-Prot
Match: ATPO_PONAB (ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16
Identity = 50/135 (37.04%), Postives = 76/135 (56.30%), Query Frame = 1
Query:  220 FSTSSLQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKAESEILDLDEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTNHFLVVLADNGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 621
            FSTS ++   K V+ P+ ++G  G YA+ALY AA K N LE+ E E+L + +  K+            V    +V ++N+I  + +FS +T + + +LA+NGRL N   +   F  +  AH+GEV  TVTS  PL
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAAPVLNPY-VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTSASPL 149          
BLAST of CB290980 vs. ExPASy Swiss-Prot
Match: ATPO_HUMAN (ATP synthase subunit O, mitochondrial OS=Homo sapiens GN=ATP5O PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.561e-15
Identity = 49/135 (36.30%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  220 FSTSSLQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKAESEILDLDEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTNHFLVVLADNGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 621
            FSTS ++   K V+ P+ ++G  G YA+ALY AA K N LE+ E E+L + +  K+            V    +V ++N+I  + +FS +T + + +LA+NGRL N   +   F  +   H+GEV  TVTS  PL
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPY-VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPL 149          
BLAST of CB290980 vs. ExPASy Swiss-Prot
Match: ATPO_RHIFE (ATP synthase subunit O, mitochondrial OS=Rhinolophus ferrumequinum GN=ATP5O PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  220 FSTSSLQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKAESEILDLDEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTNHFLVVLADNGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 621
            FSTS ++   K V+ P+ ++G  G YA+ALY AA K N LE+ E E+L + +  K+            +    +V ++N++ T+ KFS +T++ + +LA+NGRL N   +   F  +   H+GEV  +VT+  PL
Sbjct:   16 FSTSVVRPFTKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQLLKEPKMAASIMNPY-IKRSIKVKSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVISAFSTIMSVHRGEVPCSVTTASPL 149          
BLAST of CB290980 vs. ExPASy Swiss-Prot
Match: ATPO_RAT (ATP synthase subunit O, mitochondrial OS=Rattus norvegicus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.254e-14
Identity = 46/137 (33.58%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  214 KGFSTSSLQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKAESEILDLDEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTNHFLVVLADNGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 621
            + FSTS ++   K V+ P+ ++G  G YA+ALY AA K   L++ E E+L + +  K             +    +V ++ +I T+ KFS +T + + +LA+NGRL N   +   F  +   H+GEV  TVT+  PL
Sbjct:   14 RSFSTSVVRPFSKLVRPPVQVYGIEGRYATALYSAASKQKRLDQVEKELLRVGQLLKDPKVSLAVLNPY-IKRSIKVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPL 149          
BLAST of CB290980 vs. ExPASy Swiss-Prot
Match: ATPO_SORAR (ATP synthase subunit O, mitochondrial OS=Sorex araneus GN=ATP5O PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.844e-14
Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 1
Query:  214 KGFSTSSLQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKAESEILDLDEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTNHFLVVLADNGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLP 624
            + FSTS  +   K V+ P+ ++G  G YA+ALY AA K N L++ E E+L + +  K+            V    +V +I ++  + K S +T + + +LA+NGRL N   I   F  +   H+GEV  TVT+   LP
Sbjct:   14 RSFSTSVARPFAKLVRPPIQIYGVEGRYATALYSAASKQNKLDQVEKELLRVAQLLKEPKLAASILNP-HVKRAIKVKSIGDLTAREKLSPITTNLINLLAENGRLNNTPGIISAFSTMMSVHRGEVPCTVTTASALP 150          
BLAST of CB290980 vs. ExPASy Swiss-Prot
Match: ATPO_MOUSE (ATP synthase subunit O, mitochondrial OS=Mus musculus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.844e-14
Identity = 47/137 (34.31%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  214 KGFSTSSLQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKAESEILDLDEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTNHFLVVLADNGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 621
            + FSTS ++   K V+ P+ ++G  G YA+ALY AA K   L++ E E+L + +  K             +    +V ++N+I  + KFS +T + + +LA+NGRL N   I   F  +   H+GEV  TVT+  PL
Sbjct:   14 RSFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKEKKLDQVEKELLRVGQLLKDPKVSLAVLNPY-IKRTVKVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMSVHRGEVPCTVTTASPL 149          
BLAST of CB290980 vs. ExPASy Swiss-Prot
Match: ATPO_BOVIN (ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.844e-14
Identity = 46/135 (34.07%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  220 FSTSSLQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKAESEILDLDEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTNHFLVVLADNGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 621
            FSTS ++   K V+ P+ ++G  G YA+ALY AA K N LE+ E E+L + +  K+            V    +V +++++  + KFS +T++ + +LA+NGRL N   +   F  +   H+GEV  TVT+   L
Sbjct:   16 FSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPY-VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASAL 149          
BLAST of CB290980 vs. ExPASy Swiss-Prot
Match: ATPO_PIG (ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 45/135 (33.33%), Postives = 76/135 (56.30%), Query Frame = 1
Query:  220 FSTSSLQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKAESEILDLDEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTNHFLVVLADNGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 621
            FSTS ++   K V+ P+ ++G  G YA+ALY AA K N LE+ E E+L + +  K+            V    +V +++++  + KFS +T++ + +LA+NGRL +   +   F  +   H+GEV  +VT+  PL
Sbjct:   16 FSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASIMNPY-VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMSVHRGEVPCSVTTASPL 149          
The following BLAST results are available for this feature:
BLAST of CB290980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ATPO_IPOBA3.680e-4958.66ATP synthase subunit O, mitochondrial OS=Ipomoea b... [more]
ATPO_ARATH6.512e-3851.81ATP synthase subunit O, mitochondrial OS=Arabidops... [more]
ATPO_PONAB7.006e-1637.04ATP synthase subunit O, mitochondrial OS=Pongo abe... [more]
ATPO_HUMAN1.561e-1536.30ATP synthase subunit O, mitochondrial OS=Homo sapi... [more]
ATPO_RHIFE2.662e-1534.81ATP synthase subunit O, mitochondrial OS=Rhinoloph... [more]
ATPO_RAT2.254e-1433.58ATP synthase subunit O, mitochondrial OS=Rattus no... [more]
ATPO_SORAR3.844e-1434.06ATP synthase subunit O, mitochondrial OS=Sorex ara... [more]
ATPO_MOUSE3.844e-1434.31ATP synthase subunit O, mitochondrial OS=Mus muscu... [more]
ATPO_BOVIN3.844e-1434.07ATP synthase subunit O, mitochondrial OS=Bos tauru... [more]
ATPO_PIG8.564e-1433.33ATP synthase subunit O, mitochondrial OS=Sus scrof... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ag03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ag03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290980 ID=CB290980; Name=CB290980; organism=Citrus sinensis; type=EST; length=625bp
GTACTGAAGCAGCTCTCTCCAATTCACTATCCTCTGCTTCAAAGCCTTCC
CCCATATTCACTTCCCAAAAAAAAGAAATACCTGAACTGGGCATATTATG
GTTTTTAAATTTATGACATGGCAACGGTAAGTCCTATCAGATCGAGCCTC
TCTGTATTCAACAAGATTCTCAAATCCAATTCTCAGCTATCCCCTCTTCA
TCCACAGTTATCGAAAGGTTTTTCCACTTCGTCTTTGCAGAAGGAGCAGA
AAGTTAAGGTGCCCCTGGCTTTGTTTGGAGGTTCAGGAAATTATGCTTCT
GCTCTGTACATTGCGGCAGTGAAAACTAACGCACTGGAGAAGGCTGAGTC
TGAGATTCTTGACCTTGATGAGGCTTCAAAGAAGGCTGATACATATTTTC
AGTTCACAAAGGACTTGTCTGTGCCTGCAGAGACTAGAGTTAATGCCATT
AACGAAATCTGTACTCAGGCTAAATTTTCAGATGTTACCAACCACTTCTT
GGTTGTTTTGGCTGATAATGGGAGGCTTAGAAACTTAGACACCATCGCTA
AGAGGTTTGTGGAGTTAACCATGGCACACAAGGGCGAAGTAAAAGTTACT
GTTACATCCGTTATTCCACTTCCCC
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