CB290982

Overview
NameCB290982
Unique NameCB290982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7965 contig Csv1_Contig7965:2..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290982 vs. ExPASy Swiss-Prot
Match: ISCU_MOUSE (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus musculus GN=Iscu PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.325e-27
Identity = 59/75 (78.67%), Postives = 68/75 (90.67%), Query Frame = -3
Query:  321 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYE 545
            ++ G+IVDA FKTFGCGSAIASSS+ATEWVKGK +EE L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+
Sbjct:   81 DEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYK 155          
BLAST of CB290982 vs. ExPASy Swiss-Prot
Match: ISCU_HUMAN (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.325e-27
Identity = 59/75 (78.67%), Postives = 68/75 (90.67%), Query Frame = -3
Query:  321 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYE 545
            ++ G+IVDA FKTFGCGSAIASSS+ATEWVKGK +EE L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+
Sbjct:   80 DEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYK 154          
BLAST of CB290982 vs. ExPASy Swiss-Prot
Match: NIFU_RICPR (NifU-like protein OS=Rickettsia prowazekii GN=nifU PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.241e-25
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = -3
Query:  312 IVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEANR 530
            I DA FKTFGCGSAIASSS+ TEW+KGK +E+   IKNTEIAK LSLPPVKLHCS+LAEDAIKAA+ DY+  R
Sbjct:   53 ITDAKFKTFGCGSAIASSSLVTEWIKGKSVEDAKEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIADYKQKR 125          
BLAST of CB290982 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAI (NifU-like protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nifU PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.714e-25
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = -3
Query:  312 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEANR 542
            + G I DACFKT+GCGSAIASSS+ TEWVKGK +EE  SIKNT I + L LPPVK+HCS+LAEDAIKAA+ DY+  +
Sbjct:   49 EKGIIEDACFKTYGCGSAIASSSLVTEWVKGKSIEEAESIKNTTIVEELDLPPVKIHCSILAEDAIKAAISDYKRKK 125          
BLAST of CB290982 vs. ExPASy Swiss-Prot
Match: ISU1_DEBHA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Debaryomyces hansenii GN=ISU1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.714e-25
Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = -3
Query:  309 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEANRT 545
            +++G I D  FKTFGCGSAIASSS  TE VKGK +EE + IKNT IAK LSLPPVKLHCSMLAEDAIK+AVKDY + R+
Sbjct:   83 DETGVIKDVKFKTFGCGSAIASSSYLTELVKGKTIEEAVKIKNTAIAKELSLPPVKLHCSMLAEDAIKSAVKDYRSKRS 161          
BLAST of CB290982 vs. ExPASy Swiss-Prot
Match: ISU2_YEAST (Iron sulfur cluster assembly protein 2, mitochondrial OS=Saccharomyces cerevisiae GN=ISU2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.041e-25
Identity = 56/78 (71.79%), Postives = 64/78 (82.05%), Query Frame = -3
Query:  312 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEANR 545
            +KSG I +  FKTFGCGSAIASSS  TE V+G  ++E + IKNTEIAK LSLPPVKLHCSMLAEDAIKAA+KDY+  R
Sbjct:   73 DKSGIIENVKFKTFGCGSAIASSSYMTELVRGMSLDEAVKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKTKR 150          
BLAST of CB290982 vs. ExPASy Swiss-Prot
Match: NIFU_BUCBP (NifU-like protein OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=nifU PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.050e-24
Identity = 52/74 (70.27%), Postives = 63/74 (85.14%), Query Frame = -3
Query:  321 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYE 542
            K+G I DACFKT+GCGSAIASSS+ TEW+KGK + E  +IKNT IA+ L LPPVK+HCS+LAEDAIKAA+ DY+
Sbjct:   49 KNGIIQDACFKTYGCGSAIASSSLVTEWIKGKSLIEAENIKNTNIAEELDLPPVKIHCSILAEDAIKAAITDYK 122          
BLAST of CB290982 vs. ExPASy Swiss-Prot
Match: ISU1_KLULA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Kluyveromyces lactis GN=ISU1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.050e-24
Identity = 55/78 (70.51%), Postives = 65/78 (83.33%), Query Frame = -3
Query:  312 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEANR 545
            +++G I +  FKTFGCGSAIASSS  TE V+GK +E+   IKNTEIA+ LSLPPVKLHCSMLAEDAIKAA+KDY+A R
Sbjct:   97 DETGVIENVKFKTFGCGSAIASSSYMTELVRGKTLEDAAKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDYQAKR 174          
BLAST of CB290982 vs. ExPASy Swiss-Prot
Match: NIFU_SHIFL (NifU-like protein OS=Shigella flexneri GN=nifU PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.340e-24
Identity = 52/75 (69.33%), Postives = 64/75 (85.33%), Query Frame = -3
Query:  312 GQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEANR 536
            G I DA FKT+GCGSAIASSS+ TEWVKGK ++E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++ R
Sbjct:   51 GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of CB290982 vs. ExPASy Swiss-Prot
Match: NIFU_ECOLI (NifU-like protein OS=Escherichia coli (strain K12) GN=nifU PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.340e-24
Identity = 52/75 (69.33%), Postives = 64/75 (85.33%), Query Frame = -3
Query:  312 GQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEANR 536
            G I DA FKT+GCGSAIASSS+ TEWVKGK ++E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++ R
Sbjct:   51 GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
The following BLAST results are available for this feature:
BLAST of CB290982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISCU_MOUSE1.325e-2778.67Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISCU_HUMAN1.325e-2778.67Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
NIFU_RICPR1.241e-2575.34NifU-like protein OS=Rickettsia prowazekii GN=nifU... [more]
NIFU_BUCAI4.714e-2568.83NifU-like protein OS=Buchnera aphidicola subsp. Ac... [more]
ISU1_DEBHA4.714e-2572.15Iron sulfur cluster assembly protein 1, mitochondr... [more]
ISU2_YEAST8.041e-2571.79Iron sulfur cluster assembly protein 2, mitochondr... [more]
NIFU_BUCBP1.050e-2470.27NifU-like protein OS=Buchnera aphidicola subsp. Ba... [more]
ISU1_KLULA1.050e-2470.51Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_SHIFL2.340e-2469.33NifU-like protein OS=Shigella flexneri GN=nifU PE=... [more]
NIFU_ECOLI2.340e-2469.33NifU-like protein OS=Escherichia coli (strain K12)... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ag04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ag04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290982 ID=CB290982; Name=CB290982; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTATTGTTAAACTTTGAACAACATAATTAAAACAAACTTAGAAC
CATGCAGAGGATCACACTCTCAGGGGTTCAGTTACACACGCACAATTCAG
ATTCATAGATGTACAAAATGGCAGTTCTAATTAATAACCATTAACCCTTG
CACCACCTGCCATGTACCATCAATATTAGGATTTGCAGTGTCCCGGATAC
ACCTTCCAGAAGTAGCACATTAACATCATTTTTCAAATGTGTTCATCAAC
ATCTTCAAGCATCGGCAGCCTTCTCTGCAGGAGCTGCCTCTGAGGCGGCA
CTTGATTTGGTACGGTTAGCTTCGTAATCTTTTACAGCAGCCTTGATAGC
ATCTTCAGCAAGCATGCTACAATGGAGCTTAACCGGGGGTAGAGAAAGAT
GTTTTGCAATTTCCGTGTTCTTAATGGACAAAACTTCCTCCATCTGCTTC
CCTTTCACCCATTCTGTGGCAACAGATGATGAGGCGATGGCAGACCCACA
ACCGAAGGTCTTGAAGCAAGCGTCGACGATCTGACCACTCTTTTCAT
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