CB291005

Overview
NameCB291005
Unique NameCB291005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1707 contig Csv1_Contig1707:17..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB291005 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.014e-54
Identity = 104/185 (56.22%), Postives = 131/185 (70.81%), Query Frame = 3
Query:  177 SSLYDYAKRNSGPLRSPVGTVESAVTAVEGPVYQKFKGVPXXXXXXXXXXXXEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQSEAPKKE 731
            S+LY+YAK+NSGPL+S V  VE AVT V  PVYQKFK VP            E S KFDEHAPP+AK+V +Q H LI  A++KAQ+ V EA+TGGP+AA +YAA E K  +VTNSVK W KLN Y   H M D A+P AA +S +YN LV +MT  GY++ GYLPLVP+DDI KA+++ +A +K+
Sbjct:   31 SNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEKEDARRKK 215          
BLAST of CB291005 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.194e-26
Identity = 76/196 (38.78%), Postives = 99/196 (50.51%), Query Frame = 3
Query:  177 SSLYDYAKRNSGPLRSPVGTVESAVTAVEGPVYQKFKGVPXXXXXXXXXXXXEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVH------YAAAE-------SKHLLVTN--SVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQSEA 719
            SSLY+YAK NSGPL+  V TVE  V  V GPVY+KF  VP             +  + + H P L KR + Q  ++ + A + A  + SE Q  G            Y+  E       SK+  V    +V AW  LN   LF  +A + VPTAA WS+KYN  V    ++GYTV  YLPL+P + IAK F+   A
Sbjct:   38 SSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQDGSA 233          
BLAST of CB291005 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 73/196 (37.24%), Postives = 98/196 (50.00%), Query Frame = 3
Query:  183 LYDYAKRNSGPLRSPVGTVESAVTAVEGPVYQKFKGVPXXXXXXXXXXXXEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGG-----------------PRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQSEA 719
            +Y  AK  SGPL+  V +VE AV  V GPVY+K+  VP             +  + D   PP+ K+V++Q  S  + A   A+ L SE +  G                 P A   YA  E K      +V AW KLN   LF  +A +AVPTAA  S+KYN  VV+  +KGY V  Y+PLVP + I+K F + +A
Sbjct:   42 IYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPK--AEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKA 235          
BLAST of CB291005 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.366e-22
Identity = 65/177 (36.72%), Postives = 88/177 (49.72%), Query Frame = 3
Query:  174 CSSLYDYAKRNSGPLRSPVGTVESAVTAVEGPVYQKFKGVPXXXXXXXXXXXXEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 704
            C+ LY YAK  +GPL+  V TVE AV  V  PVY +F  VP            E     D H P   K+V+SQ           A+++VSE +  G         ++ +      +V AW KLN   LF  +A+  +P AA  ++KYN ++V   +KGY V  YLPLVP + IAK F
Sbjct:    3 CAILYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHVPSNVKKVSSQ-----------ARSVVSEVRRDGVSTFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVF 164          
BLAST of CB291005 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19
Identity = 62/185 (33.51%), Postives = 93/185 (50.27%), Query Frame = 3
Query:  177 SSLYDYAKRNSGPLRSPVGTVESAVTAVEGPVYQKFKGVPXXXXXXXXXXXXEASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 704
            ++ Y YAK+ +GPLR  V  VE  V AV GPVY +F GVP            E+ ++ D   PP       LA+  A++V    L+ TA+  A++ ++ A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V +  K+G  V  YLPLVP + +++ F
Sbjct:   53 AAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232          
BLAST of CB291005 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19
Identity = 62/185 (33.51%), Postives = 93/185 (50.27%), Query Frame = 3
Query:  177 SSLYDYAKRNSGPLRSPVGTVESAVTAVEGPVYQKFKGVPXXXXXXXXXXXXEASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 704
            ++ Y YAK+ +GPLR  V  VE  V AV GPVY +F GVP            E+ ++ D   PP       LA+  A++V    L+ TA+  A++ ++ A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V +  K+G  V  YLPLVP + +++ F
Sbjct:   53 AAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232          
BLAST of CB291005 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.256e-17
Identity = 57/176 (32.39%), Postives = 86/176 (48.86%), Query Frame = 3
Query:  177 SSLYDYAKRNSGPLRSPVGTVESAVTAVEGPVYQKFKGVPXXXXXXXXXXXXEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 704
            S+LY YAK  SGPL+  V T+E+ V  V  PVY     +P             +    D   PP+ K+V++Q +S+ + A +   ++ S     G +       A  +      +V  W  LN   L   +A++ VPTA  +S+KYN +V   T++GY V  YLPL+P + I K F
Sbjct:   28 STLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGVQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLLPTEKITKVF 199          
BLAST of CB291005 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 54/190 (28.42%), Postives = 87/190 (45.79%), Query Frame = 3
Query:  165 WCAC-SSLYDYAKRNSGPLRSPVGTVESAVTAVEGPVYQKFKGVPXXXXXXXXXXXXEASRKFDEHAPPLAKRVASQVHSLIETASQKA-----QNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQSE 716
            + AC S+LY+ AK N+GPL+  V  +E  V  V  P+Y+KF  VP            +     + + P L K+ +SQ  ++     +       +++    +     AA +YAA              W  LN   LF  +A + +PTA  WS+KYN  V  +  + Y    YLP++PI+ I+   +Q +
Sbjct:   54 FAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALTVATEVQRTGVVDTTKSIARSVRDKYEPAAEYYAAT------------LWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLPMIPIEKISDILEQDQ 231          
The following BLAST results are available for this feature:
BLAST of CB291005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
Y1736_ARATH3.014e-5456.22REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
SRP_VITRI1.194e-2638.78Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y3550_ARATH3.251e-2437.24REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_PHAVU1.366e-2236.72Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
Y5513_ORYSJ5.371e-1933.51REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI5.371e-1933.51REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
SRPP_HEVBR2.256e-1732.39Small rubber particle protein OS=Hevea brasiliensi... [more]
Y2778_ARATH2.112e-1528.42REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02ah05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ah05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291005 ID=CB291005; Name=CB291005; organism=Citrus sinensis; type=EST; length=737bp
GTACACATTATTGAACGCTGCAATCAATAGCAAACTAATTTCTCGCGAGA
TCTAAAAGCAATATCGAATAATTCATCTTTTGCGCAGTGAAGATATGGAG
ACTGAGAGGAAGAAACAGGAACTGAGGCATCTTGGATTTATGAGGATAGC
CGCGATTCAGGCTCTGGTGTGCGTGCTCGAGTTTGTACGACTACGCAAAA
CGCAACTCGGGGCCGCTACGCTCACCGGTTGGGACTGTCGAAAGCGCCGT
GACTGCCGTCGAGGGACCTGTTTATCAGAAATTCAAGGGCGTGCCTGATG
ATCTCCTCGTTTTTCTTGATAAGAAGGTGGATGAGGCTTCACGCAAGTTT
GACGAGCACGCTCCCCCTTTGGCCAAGCGGGTTGCCAGCCAAGTACATAG
TCTAATTGAAACAGCATCACAGAAAGCTCAAAATCTTGTGAGTGAGGCCC
AAACCGGGGGGCCTCGAGCAGCTGTCCATTATGCTGCTGCTGAGTCTAAA
CACCTTCTGGTAACAAATTCCGTGAAAGCATGGTATAAACTAAACCACTA
TGCATTGTTCCACACAATGGCAGATATGGCTGTTCCCACAGCTGCACAGT
GGTCCAAGAAGTATAACCATCTTGTCGTGGAGATGACGAAGAAGGGTTAC
ACAGTCTTTGGCTATCTTCCTTTGGTTCCCATTGATGACATAGCCAAAGC
TTTTAAGCAGAGTGAAGCTCCCAAGAAAGAACATGCT
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