CB291008

Overview
NameCB291008
Unique NameCB291008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB291008_ssr219 microsatellite CB291008_ssr219:219..230. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.049e-64
Identity = 118/164 (71.95%), Postives = 136/164 (82.93%), Query Frame = -2
Query:  239 RMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 730
            R+PDESV TENPRDELLRRVKGL P VVTLVEQE N+NTAPF+ RV+E+CA YGAL +S+ESTV   +S R KVEEG+ RKL N+VACEG DR+ERCEVFGKWR RM MAGFEL P+S+ I ESM++R   GNRV+PGF VKE+NGG+CFGWMGR L V  AWR
Sbjct:  480 RVPDESVCTENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGALLESVESTVPSTNSDRAKVEEGIGRKLVNAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSEKIAESMKSR---GNRVHPGFTVKEDNGGVCFGWMGRALTVASAWR 640          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.748e-38
Identity = 83/164 (50.61%), Postives = 109/164 (66.46%), Query Frame = -2
Query:  239 MPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 727
            MPDESVSTEN RD LLR VK LSP VVTLVEQE+NTNTA F  R  E   YY A+F+SI+ T+ RDH  R+ VE+  L+R + N +ACEG DRVER E+ GKWR+R  MAGF   P+S ++  ++++ L      +  + ++E +G +  GWM R L    AW+
Sbjct:  330 MPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLARDVVNIIACEGADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLL---RNYSDKYRLEERDGALYLGWMHRDLVASCAWK 490          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCL21_ARATH (Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.644e-38
Identity = 79/164 (48.17%), Postives = 110/164 (67.07%), Query Frame = -2
Query:  239 MPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 727
            +PDESVS EN RD LLR VK LSP VVTLVEQE NTNT+PF+ R  E  +YY A+F+SI+  + R+H  R+ +E+  ++R + N +ACEG +R+ER E+ GKW++R  MAGFE  P+S II  ++R  L      + G+ ++E +G +  GWM R L    AW+
Sbjct:  253 LPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRD---YSNGYAIEERDGALYLGWMDRILVSSCAWK 413          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.297e-37
Identity = 80/163 (49.08%), Postives = 107/163 (65.64%), Query Frame = -2
Query:  242 MPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAW 727
            +PDESVST N RD LLR VK LSP V+TLVE E+NTNTAPF  R  E   YY A+F+SI+ T+ RD   R+ +E+  L+R++ N +ACEG +R ER E FGKW+AR+ MAGF   P+S ++  ++RT L S    +  + + E +G +  GW  R L V  AW
Sbjct:  384 IPDESVSTANHRDRLLRMVKSLSPKVLTLVEMESNTNTAPFPQRFAETLDYYTAIFESIDLTLPRDDRERINMEQHCLAREIVNLIACEGEERAERYEPFGKWKARLTMAGFRPSPLSSLVNATIRTLLQS---YSDNYKLAERDGALYLGWKSRPLVVSSAW 543          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.061e-35
Identity = 75/162 (46.30%), Postives = 105/162 (64.81%), Query Frame = -2
Query:  242 PDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAW 724
            PDESV   NPRD LLR VKGLSP V TLVEQE++TNT PF+ R  E   YY A+F+SI++ + RD+  R+ VE+  L++ + N +ACEG+DRVER E+ GKW++R+ MAGF   P+S  +   +R  L+     +  + + E++G +  GW  R L    AW
Sbjct:  412 PDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFGETMEYYSAMFESIDANLPRDNKERISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFRPYPLSSYVNSVIRKLLAC---YSDKYTLDEKDGAMLLGWRSRKLISASAW 570          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.809e-35
Identity = 79/164 (48.17%), Postives = 108/164 (65.85%), Query Frame = -2
Query:  239 MPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVE-EGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 727
            MPDESV+T N RDELL  VK L+P +VT+VEQ+ NTNT+PF  R  EA  YY A+F+S++ T+ R+   R+ VE + L+R + N VACEG +R+ER E  GKWRARM MAGF  KPMS  +  +++  +    +    + +KEE G + F W  ++L V  AWR
Sbjct:  432 MPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIK--QQYCNKYKLKEEMGELHFCWEEKSLIVASAWR 593          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.979e-35
Identity = 78/164 (47.56%), Postives = 107/164 (65.24%), Query Frame = -2
Query:  239 MPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 727
            MPDESV+ EN RD LLR VK LSP+VVTLVEQE NTNTAPF+ R  E   +Y A+F+SI+  + RDH  R+ VE+  L+R++ N +ACEG +R ER E  GKWR+R  MAGF+  P+S  +  +++  L S    +  + ++E +G +  GW  + L    AWR
Sbjct:  437 MPDESVTVENHRDRLLRLVKHLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLES---YSEKYTLEERDGALYLGWKNQPLITSCAWR 597          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCL13_ARATH (Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.345e-22
Identity = 54/101 (53.47%), Postives = 71/101 (70.30%), Query Frame = -2
Query:  428 MPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEG-LSRKLANSVACEGRDRVERCEVFG 727
            MPDESVS EN RD LL  +K LSP +VTLVEQE+NTNT+PF++R  E   YY A+F+SI++   RD   R+  E+  ++R + N +ACE  +RVER EV G
Sbjct:  182 MPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDKQRISAEQHCVARDIVNMIACEESERVERHEVLG 282          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: RGL2_ARATH (DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.756e-22
Identity = 61/151 (40.40%), Postives = 82/151 (54.30%), Query Frame = -2
Query:  239 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 691
            ++LL  VK + PS+VT+VEQE N N   F+ R NEA  YY +LFDS+E +       RV  E  L R++ N VA EG DRVER E   +WR RM+ AGF+   +         + L S      G+ V+E +G +  GW  R L    AW+
Sbjct:  396 EKLLNTVKAIKPSIVTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDRVMSEVYLGRQILNVVAAEGSDRVERHETAAQWRIRMKSAGFDPIHLGS-SAFKQASMLLSLYATGDGYRVEENDGCLMIGWQTRPLITTSAWK 545          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: RGL3_ARATH (DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.536e-21
Identity = 60/153 (39.22%), Postives = 82/153 (53.59%), Query Frame = -2
Query:  239 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQ--IIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 691
            ++LL  VK + P +VT+VEQE N N   F+ R NEA  YY +LFDS+E  V+     RV  E  L R++ N VA EG DR+ER E   +WR RM  AGF+   +        S+   LS G     G+ V+E +G +   W  + L    AW+
Sbjct:  367 EKLLATVKAVKPGLVTVVEQEANHNGDVFLDRFNEALHYYSSLFDSLEDGVVIPSQDRVMSEVYLGRQILNLVATEGSDRIERHETLAQWRKRMGSAGFDPVNLGSDAFKQASLLLALSGG---GDGYRVEENDGSLMLAWQTKPLIAASAWK 516          
The following BLAST results are available for this feature:
BLAST of CB291008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
SCL8_ARATH7.049e-6471.95Scarecrow-like protein 8 OS=Arabidopsis thaliana G... [more]
PAT1_ARATH1.748e-3850.61Scarecrow-like transcription factor PAT1 OS=Arabid... [more]
SCL21_ARATH6.644e-3848.17Scarecrow-like protein 21 OS=Arabidopsis thaliana ... [more]
CIGR2_ORYSJ3.297e-3749.08Chitin-inducible gibberellin-responsive protein 2 ... [more]
CIGR1_ORYSJ1.061e-3546.30Chitin-inducible gibberellin-responsive protein 1 ... [more]
SCL1_ARATH1.809e-3548.17Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
SCL5_ARATH8.979e-3547.56Scarecrow-like protein 5 OS=Arabidopsis thaliana G... [more]
SCL13_ARATH1.345e-2253.47Scarecrow-like protein 13 OS=Arabidopsis thaliana ... [more]
RGL2_ARATH1.756e-2240.40DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2... [more]
RGL3_ARATH2.536e-2139.22DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ah07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ah07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291008 ID=CB291008; Name=CB291008; organism=Citrus sinensis; type=EST; length=731bp
TCGCACTCCCGCACATACATACGTGCAAATAGTTCCAATAACTAAAAATA
AAATAAAAAATTAAATGCAAAAAAAAAAAAAGAAAAAAGTCCCTCAAATA
CAAAACGCTACTCCTTTATTATTATTTCCTTTAGGGGGCCTCTTTTTTTT
CTTTCCCTTTCCATTTTCTCAGGAAAACGTTCGAAAATATAATAACAATT
AATAATATTAAATTAAAAAGAGAGAGAGAGTGAATTCAACGCCAGGCAAA
TACGACGGGGAGAGTTCGACCCATCCAGCCAAAGCAAATGCCGCCGTTTT
CTTCTTTGACGGGGAACCCCGGGTTCACTCGGTTCCCGGAACTCAGTCGA
GTCCGCATTGACTCGGGAATGATTTGACTCATTGGCTTCAACTCGAACCC
AGCCATCCTCATGCGGGCTCGCCACTTGCCAAACACCTCGCATCTCTCCA
CACGGTCCCTGCCTTCACAAGCAACCGAGTTAGCCAATTTACGACTCAGC
CCTTCCTCGACTTTGACTCGGGCCGAGTGGTCTCTCAGCACGGTCGACTC
GATCGAGTCAAACAACGCTCCGTAATATGCACACGCCTCGTTGACGCGCG
CCATGAACGGCGCCGTATTTGTGTTCGTTTCTTGCTCCACCAACGTTACC
ACACTCGGTGACAACCCCTTTACACGCCGGAGCAGCTCGTCCCTCGGATT
CTCCGTTGACACGCTCTCGTCCGGCATTCGA
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