CB291024

Overview
NameCB291024
Unique NameCB291024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2646 contig Csv1_Contig2646:785..1542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB2_GOSHI (V-type proton ATPase subunit B 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.324e-52
Identity = 106/135 (78.52%), Postives = 108/135 (80.00%), Query Frame = -3
Query:  351 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRDAVN 755
            QIYIDRQL NRQIYPPINVLPSL RLMKSAIGEGMTRRDH+DVSNQLYANYAIGKDVQAMKAVVG                  ERKFV QGAYD RNIFQ LDLAWTL RIFPRE+ HRIP KTLDQYYSRDA N
Sbjct:  252 QIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAAN 386          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB2_ARATH (V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.730e-52
Identity = 106/135 (78.52%), Postives = 108/135 (80.00%), Query Frame = -3
Query:  351 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRDAVN 755
            QIYIDRQL NRQIYPPINVLPSL RLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVG                  ERKFVAQGAYD RNIFQ LDLAWTL RIFPRE+ HRIP KTLDQ+YSRD  N
Sbjct:  353 QIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDTTN 487          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB2_HORVU (V-type proton ATPase subunit B 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.259e-52
Identity = 106/135 (78.52%), Postives = 109/135 (80.74%), Query Frame = -3
Query:  351 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRDAVN 755
            QIYIDRQL NRQIYPPINVLPSL RLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVG                  ERKFVAQGAYD RNIFQ LDLAWTL RIFPRE+ HRIP KTLDQ+YSRDA +
Sbjct:  349 QIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDATH 483          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB1_HORVU (V-type proton ATPase subunit B 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.121e-51
Identity = 105/135 (77.78%), Postives = 108/135 (80.00%), Query Frame = -3
Query:  351 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRDAVN 755
            QIYIDRQL NRQIYPPINVLPSL RLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVG                  ERKFVAQGAYD RNIFQ LDLAWTL RIFPRE+ HRIP KTLD +YSRDA +
Sbjct:  354 QIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDAFYSRDAAH 488          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB3_ARATH (V-type proton ATPase subunit B3 OS=Arabidopsis thaliana GN=VHA-B3 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.261e-51
Identity = 103/135 (76.30%), Postives = 108/135 (80.00%), Query Frame = -3
Query:  351 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRDAVN 755
            QIYIDRQL NRQIYPPINVLPSL RLMKSAIGEGMTR+DHSDVSNQLYANYAIGKDVQAMKAVVG                  ERKFV QGAYD RNIFQ LDLAWTL RIFPRE+ HRIP KTLDQ+YSRD+ +
Sbjct:  353 QIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVMQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDSTS 487          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB1_ARATH (V-type proton ATPase subunit B1 OS=Arabidopsis thaliana GN=VHA-B1 PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 4.261e-51
Identity = 103/135 (76.30%), Postives = 108/135 (80.00%), Query Frame = -3
Query:  351 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRDAVN 755
            QIYIDRQL NRQIYPPINVLPSL RLMKSAIGEGMTR+DHSDVSNQLYANYAIGKDVQAMKAVVG                  ERKFV QGAYD RNIFQ LDLAWTL RIFPRE+ HRIP KTLDQ+YSRD+ +
Sbjct:  352 QIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVMQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDSTS 486          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB1_GOSHI (V-type proton ATPase subunit B 1 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.240e-50
Identity = 104/135 (77.04%), Postives = 106/135 (78.52%), Query Frame = -3
Query:  351 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRDAVN 755
            QIYIDRQL NRQIYPPINVLPSL RLMKSAIGEGMTRRDH+DVSNQLYANYAIGKDVQAMKAVVG                  ERK V QGAYD RNIFQ LDLAWTL RIFPRE+ HRIP KT DQYYSRDA N
Sbjct:  354 QIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKVVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTHDQYYSRDAGN 488          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB1_ACEAT (V-type proton ATPase subunit B 1 OS=Acetabularia acetabulum PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.722e-42
Identity = 88/131 (67.18%), Postives = 97/131 (74.05%), Query Frame = -3
Query:  363 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSR 755
            QIY+DRQL NRQIYPPINVLPSL RLMKSAIGEGMTR+DHS+VSNQLYANYAIGKDV AMKAVVG                  ERKFV QG Y+ R IF  LDLAWTL R+FP+E+  RI  KTL++ Y R
Sbjct:  359 QIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSEVSNQLYANYAIGKDVAAMKAVVGEEALSSEDLLYLEFLDKFERKFVNQGHYEARTIFDSLDLAWTLLRLFPKELLRRITAKTLEKMYER 489          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB2_PONAB (V-type proton ATPase subunit B, brain isoform OS=Pongo abelii GN=ATP6V1B2 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.054e-42
Identity = 85/133 (63.91%), Postives = 98/133 (73.68%), Query Frame = -3
Query:  357 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRDA 755
            QIY+DRQL NRQIYPPINVLPSL RLMKSAIGEGMTR+DH+DVSNQLYA YAIGKDVQAMKAVVG                  ER F+AQG Y+ R +F+ LD+ W L RIFP+E+  RIP  TL ++Y RD+
Sbjct:  376 QIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVFETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDS 508          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB2_HUMAN (V-type proton ATPase subunit B, brain isoform OS=Homo sapiens GN=ATP6V1B2 PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 8.054e-42
Identity = 85/133 (63.91%), Postives = 98/133 (73.68%), Query Frame = -3
Query:  357 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRDA 755
            QIY+DRQL NRQIYPPINVLPSL RLMKSAIGEGMTR+DH+DVSNQLYA YAIGKDVQAMKAVVG                  ER F+AQG Y+ R +F+ LD+ W L RIFP+E+  RIP  TL ++Y RD+
Sbjct:  376 QIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVFETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDS 508          
The following BLAST results are available for this feature:
BLAST of CB291024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
VATB2_GOSHI1.324e-5278.52V-type proton ATPase subunit B 2 (Fragment) OS=Gos... [more]
VATB2_ARATH1.730e-5278.52V-type proton ATPase subunit B2 OS=Arabidopsis tha... [more]
VATB2_HORVU2.259e-5278.52V-type proton ATPase subunit B 2 OS=Hordeum vulgar... [more]
VATB1_HORVU1.121e-5177.78V-type proton ATPase subunit B 1 OS=Hordeum vulgar... [more]
VATB3_ARATH4.261e-5176.30V-type proton ATPase subunit B3 OS=Arabidopsis tha... [more]
VATB1_ARATH4.261e-5176.30V-type proton ATPase subunit B1 OS=Arabidopsis tha... [more]
VATB1_GOSHI1.240e-5077.04V-type proton ATPase subunit B 1 OS=Gossypium hirs... [more]
VATB1_ACEAT4.722e-4267.18V-type proton ATPase subunit B 1 OS=Acetabularia a... [more]
VATB2_PONAB8.054e-4263.91V-type proton ATPase subunit B, brain isoform OS=P... [more]
VATB2_HUMAN8.054e-4263.91V-type proton ATPase subunit B, brain isoform OS=H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291024 ID=CB291024; Name=CB291024; organism=Citrus sinensis; type=EST; length=757bp
TTTTTTTTTTTTTTTTTAGACAGAACTTCTGGATAAATAGAATAATCCTC
AAACTTGGGCATTATAATCCTCACTACCATGGTTTCAATATTGATAAAAA
GTATCCAGATCCCCCTAATAAATAGAGATACAGGAATTACAAGATCTAAA
AAGCCCTCCGCTGAAAGAATATTTGCATCTTTTGACTAAACAAAAAGCTT
TGCACGGGGGCCTCAAGGGGACTACAACCTTTATTATTTCTGCTCAACGG
AAAAATGCAACCTATATCAAAAAGCTGGGGAATAAACAAATTGTCGACAA
AACCAACGAGGCAGCAAGGTACATGTCAGTACAAAAGACCTTCTTCATCA
ATTAACTGCATCACGGCTGTAGTACTGGTCAAGGGTCTTTCCTGGTATAC
GATGGAAAACCTCCCGAGGAAAGATGCGAAAAAGTGTCCATGCCAAATCA
AGAAATTGGAAAATATTCCTAAAGTCATAAGCTCCTTGAGCAACAAATTT
TCTCTCAAACTTATCCAGGAACTCTAAGTACAGCAAATCCTCAAAAAAAA
GTGCTTCTTCTCCGACCACAGCCTTCATTGCCTGGACATCCTTCCCAATG
GCATAATTTGCATACAGCTGGTTGGAAACATCGGAATGGTCCCTACGAGT
CATCCCCTCACCAATAGCACTCTTCATCAAACGAAATAGGGATGGAAGGA
CATTGATCGGAGGATATATCTGTCTGTTCTGGAGCTGCCGGTCAATGTAA
ATCTGCC
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