CB291025

Overview
NameCB291025
Unique NameCB291025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB2_GOSHI (V-type proton ATPase subunit B 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.879e-47
Identity = 100/135 (74.07%), Postives = 102/135 (75.56%), Query Frame = -3
Query:  352 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQYYSRDAVN 756
            QIYI RQL NRQIYPPINVLPSLSRLMKS IGEGMTRRDH+DVSNQLYANYAIGKDVQAMKAVVG                  ERKFV QGAYD RNIFQ  DLA TL  IFPRE+ H IP K LDQYYSRDA N
Sbjct:  252 QIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAAN 386          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB2_ARATH (V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.760e-47
Identity = 100/135 (74.07%), Postives = 102/135 (75.56%), Query Frame = -3
Query:  352 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQYYSRDAVN 756
            QIYI RQL NRQIYPPINVLPSLSRLMKS IGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVG                  ERKFVAQGAYD RNIFQ  DLA TL  IFPRE+ H IP K LDQ+YSRD  N
Sbjct:  353 QIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDTTN 487          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB2_HORVU (V-type proton ATPase subunit B 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.910e-47
Identity = 100/135 (74.07%), Postives = 103/135 (76.30%), Query Frame = -3
Query:  352 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQYYSRDAVN 756
            QIYI RQL NRQIYPPINVLPSLSRLMKS IGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVG                  ERKFVAQGAYD RNIFQ  DLA TL  IFPRE+ H IP K LDQ+YSRDA +
Sbjct:  349 QIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDATH 483          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB1_HORVU (V-type proton ATPase subunit B 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.437e-46
Identity = 99/135 (73.33%), Postives = 102/135 (75.56%), Query Frame = -3
Query:  352 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQYYSRDAVN 756
            QIYI RQL NRQIYPPINVLPSLSRLMKS IGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVG                  ERKFVAQGAYD RNIFQ  DLA TL  IFPRE+ H IP K LD +YSRDA +
Sbjct:  354 QIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDAFYSRDAAH 488          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB3_ARATH (V-type proton ATPase subunit B3 OS=Arabidopsis thaliana GN=VHA-B3 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.261e-46
Identity = 97/135 (71.85%), Postives = 102/135 (75.56%), Query Frame = -3
Query:  352 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQYYSRDAVN 756
            QIYI RQL NRQIYPPINVLPSLSRLMKS IGEGMTR+DHSDVSNQLYANYAIGKDVQAMKAVVG                  ERKFV QGAYD RNIFQ  DLA TL  IFPRE+ H IP K LDQ+YSRD+ +
Sbjct:  353 QIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVMQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDSTS 487          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB1_ARATH (V-type proton ATPase subunit B1 OS=Arabidopsis thaliana GN=VHA-B1 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 9.261e-46
Identity = 97/135 (71.85%), Postives = 102/135 (75.56%), Query Frame = -3
Query:  352 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQYYSRDAVN 756
            QIYI RQL NRQIYPPINVLPSLSRLMKS IGEGMTR+DHSDVSNQLYANYAIGKDVQAMKAVVG                  ERKFV QGAYD RNIFQ  DLA TL  IFPRE+ H IP K LDQ+YSRD+ +
Sbjct:  352 QIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVMQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDSTS 486          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB1_GOSHI (V-type proton ATPase subunit B 1 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.694e-45
Identity = 98/135 (72.59%), Postives = 100/135 (74.07%), Query Frame = -3
Query:  352 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQYYSRDAVN 756
            QIYI RQL NRQIYPPINVLPSLSRLMKS IGEGMTRRDH+DVSNQLYANYAIGKDVQAMKAVVG                  ERK V QGAYD RNIFQ  DLA TL  IFPRE+ H IP K  DQYYSRDA N
Sbjct:  354 QIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKVVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTHDQYYSRDAGN 488          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB1_ACEAT (V-type proton ATPase subunit B 1 OS=Acetabularia acetabulum PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.026e-36
Identity = 82/131 (62.60%), Postives = 91/131 (69.47%), Query Frame = -3
Query:  364 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQYYSR 756
            QIY+ RQL NRQIYPPINVLPSLSRLMKS IGEGMTR+DHS+VSNQLYANYAIGKDV AMKAVVG                  ERKFV QG Y+ R IF   DLA TL  +FP+E+   I  K L++ Y R
Sbjct:  359 QIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSEVSNQLYANYAIGKDVAAMKAVVGEEALSSEDLLYLEFLDKFERKFVNQGHYEARTIFDSLDLAWTLLRLFPKELLRRITAKTLEKMYER 489          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB2_PONAB (V-type proton ATPase subunit B, brain isoform OS=Pongo abelii GN=ATP6V1B2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.751e-36
Identity = 79/133 (59.40%), Postives = 92/133 (69.17%), Query Frame = -3
Query:  358 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQYYSRDA 756
            QIY+ RQL NRQIYPPINVLPSLSRLMKS IGEGMTR+DH+DVSNQLYA YAIGKDVQAMKAVVG                  ER F+AQG Y+ R +F+  D+   L  IFP+E+   IP   L ++Y RD+
Sbjct:  376 QIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVFETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDS 508          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB2_HUMAN (V-type proton ATPase subunit B, brain isoform OS=Homo sapiens GN=ATP6V1B2 PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.751e-36
Identity = 79/133 (59.40%), Postives = 92/133 (69.17%), Query Frame = -3
Query:  358 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQYYSRDA 756
            QIY+ RQL NRQIYPPINVLPSLSRLMKS IGEGMTR+DH+DVSNQLYA YAIGKDVQAMKAVVG                  ER F+AQG Y+ R +F+  D+   L  IFP+E+   IP   L ++Y RD+
Sbjct:  376 QIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVFETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDS 508          
The following BLAST results are available for this feature:
BLAST of CB291025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
VATB2_GOSHI2.879e-4774.07V-type proton ATPase subunit B 2 (Fragment) OS=Gos... [more]
VATB2_ARATH3.760e-4774.07V-type proton ATPase subunit B2 OS=Arabidopsis tha... [more]
VATB2_HORVU4.910e-4774.07V-type proton ATPase subunit B 2 OS=Hordeum vulgar... [more]
VATB1_HORVU2.437e-4673.33V-type proton ATPase subunit B 1 OS=Hordeum vulgar... [more]
VATB3_ARATH9.261e-4671.85V-type proton ATPase subunit B3 OS=Arabidopsis tha... [more]
VATB1_ARATH9.261e-4671.85V-type proton ATPase subunit B1 OS=Arabidopsis tha... [more]
VATB1_GOSHI2.694e-4572.59V-type proton ATPase subunit B 1 OS=Gossypium hirs... [more]
VATB1_ACEAT1.026e-3662.60V-type proton ATPase subunit B 1 OS=Acetabularia a... [more]
VATB2_PONAB1.751e-3659.40V-type proton ATPase subunit B, brain isoform OS=P... [more]
VATB2_HUMAN1.751e-3659.40V-type proton ATPase subunit B, brain isoform OS=H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291025 ID=CB291025; Name=CB291025; organism=Citrus sinensis; type=EST; length=758bp
TTTTTTTTTTTTTTTTTAAGACCCACTTACGGGATAAATAGAATAATCTT
CAAACTTGGGCATTCTAATCCTCACTACCATGGTTTCAATATTGATAAAA
AGTATCCAAATCCCACTAATAAATAAAGATACAGGAATTACAAAATCTAA
AAAGCCCTCCCCTGAAAAAATATTTGCATCTTTTGACTAAACAAAAAGCT
TTGCACGGGGGCCTCAAGGGGACTACAACCTTTATTATTTCTGCTCAACG
GAAAAATGCAACCTATATCAAAAAGCTGGGGAATAAACAAATTGTCGACA
AAACCAACGAGGCAGCAAGGTACATGTCAGTACAAAAAACCTTCTTCATC
AATTAACTGCATCACGGCTGTAATACTGGTCAAGGGGCTTTCCTGGTATA
CAATGGAAAACCTCCCGAGGAAAGATGCAAAAAAGTGTCCTTGCCAAATC
AAAAAATTGGAAAATATTCCTAAAGTCATAAGCTCCTTGAGCAACAAATT
TTCTCTCAAACTTATCCAGGAACTCTAAGTACAGCAAATCCTCAAAAAAA
AGTGCTTCTTCTCCGACCACAGCCTTCATTGCCTGGACATCCTTCCCAAT
GGCATAATTTGCATACAGCTGGTTGGAAACATCGGAATGGTCCCTACGAG
TCATCCCCTCACCAATAACACTCTTCATCAAACGAGATAGGGATGGAAGG
ACATTGATCGGAGGATATATCTGTCTGTTCTGGAGCTGCCGGGCAATGTA
AATCTGCC
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