CB291045

Overview
NameCB291045
Unique NameCB291045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:344..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB291045 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 2.942e-80
Identity = 140/174 (80.46%), Postives = 154/174 (88.51%), Query Frame = -1
Query:  138 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSPVACLLLKLVTNGQPTSAFALSSGVGAWNAVVFEIVMPFGLVYTVYATALAPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 659
            NISGGHVNPAVTFGAF+GGNI+LLRGILYWIAQLLGS VACL+LK  T G    AF LS+GVG  NA VFEIVM FGLVYTVYATA+ PK GSLGTIAPIAIGFIVGANILAGGAF GASMNPAV+FGPA+VSW+W NHWVYW GPL+GGG+AG++YE FFIN +HEQLPTT+Y
Sbjct:   78 NISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLVGGGIAGLIYEVFFINTTHEQLPTTDY 251          
BLAST of CB291045 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 289.656 bits (740), Expect = 1.046e-77
Identity = 138/175 (78.86%), Postives = 154/175 (88.00%), Query Frame = -1
Query:  138 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSPVACLLLKLVTNGQPTSAFALSSGVGAWNAVVFEIVMPFGLVYTVYATALAPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQ-SHEQLPTTEY 659
            NISGGHVNPAVTFG  +GGNI+LLRGILYWIAQLLGS  AC LL   T G+P  AF LS+GVG+ NA+VFEIVM FGLVYTVYATA+ PK GSLGTIAPIAIGFIVGANILAGGAF GASMNPAV+FGPA+VSW+W NHWVYW GPLIGGGLAGI+Y+F FI++ +HEQLPTT+Y
Sbjct:   79 NISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLIGGGLAGIIYDFVFIDENAHEQLPTTDY 253          
BLAST of CB291045 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.331e-77
Identity = 138/174 (79.31%), Postives = 151/174 (86.78%), Query Frame = -1
Query:  138 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSPVACLLLKLVTNGQPTSAFALSSGVGAWNAVVFEIVMPFGLVYTVYATALAPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 659
            NISGGHVNPAVTFGAFVGGNI+L RG+LYWIAQLLGS VAC LL+  T G  T  F L+ GV  W A+V EIVM FGLVYTVYATA+ PKKGSLGTIAPIAIGFIVGANIL GGAFDGASMNPAVSFGPALVSWSW++ WVYWVGPLIGGGLAG++YE  FI+ +HEQLPTT+Y
Sbjct:   78 NISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFGLT-GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWSWESQWVYWVGPLIGGGLAGVIYEVLFISHTHEQLPTTDY 250          
BLAST of CB291045 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.511e-76
Identity = 136/174 (78.16%), Postives = 149/174 (85.63%), Query Frame = -1
Query:  138 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSPVACLLLKLVTNGQPTSAFALSSGVGAWNAVVFEIVMPFGLVYTVYATALAPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 659
            NISGGHVNPAVTFGAFVGGNI+L RG+LYW+AQLLGS VAC LL+  T GQ T  F L+ GV  W A+V EIVM FGLVYTVYATA+ PKKGSLGTIAPIAIGFIVGANIL GGAFDGASMNPAVSFGPALVSW W   WVYWVGPLIGGGLAG++YE  FI+ +HEQLP+T+Y
Sbjct:   78 NISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGTFGLT-GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWEWGYQWVYWVGPLIGGGLAGVIYELLFISHTHEQLPSTDY 250          
BLAST of CB291045 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.850e-75
Identity = 132/175 (75.43%), Postives = 151/175 (86.29%), Query Frame = -1
Query:  138 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSPVACLLLKLVTNGQPTSAFALSSGVGAWNAVVFEIVMPFGLVYTVYATALAPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQ-SHEQLPTTEY 659
            NISGGHVNPAVTFGAFVGGNISL++ ++YW+AQLLGS VACLLLK+ T G    AF+LS+GVGAWNAVVFEIVM FGLVYTVYATA+ PKKG LG IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPA+V+  WDNHWVYW+GP +G  +A ++Y+  FI Q  H+QLPT +Y
Sbjct:   78 NISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGVWDNHWVYWLGPFVGAAIAALIYDIIFIGQRPHDQLPTADY 252          
BLAST of CB291045 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.729e-72
Identity = 130/175 (74.29%), Postives = 147/175 (84.00%), Query Frame = -1
Query:  138 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSPVACLLLKLVTNGQPTSAFALSSGVGAWNAVVFEIVMPFGLVYTVYATALAPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFI-NQSHEQLPTTEY 659
            N+SGGHVNPAVTFGAF+GGNI+LLR ILYWIAQLLG+ VACLLLK+ T G  T+AF+LS GV  WNAVVFEIVM FGLVYTVYATA+ PKKG +G IAP+AIG IVGANIL GGAFDGASMNPAVSFGPA+VSW W NHWVYWVGP IG  +A IVY+  FI +  HE LP+ ++
Sbjct:   78 NVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVVSWIWTNHWVYWVGPFIGAAIAAIVYDTIFIGSNGHEPLPSNDF 252          
BLAST of CB291045 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.729e-72
Identity = 132/173 (76.30%), Postives = 148/173 (85.55%), Query Frame = -1
Query:  144 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSPVACLLLKLVTNGQPTSAFALSSGVGAWNAVVFEIVMPFGLVYTVYATALAPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQ-SHEQLPTT 659
            NISGGHVNPAVTFGAFVGGNISLL+ ++YW+AQLLGS VACLLLK+ T G    AF+LS+GVGA NAVV E+VM FGLVYTVYATA+ PKKG LG IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPA+V+  W+NHWVYWVGPL G  +A +VY+  FI Q  H+QLPTT
Sbjct:   78 NISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGVWENHWVYWVGPLAGAAIAALVYDIIFIGQRPHQQLPTT 250          
BLAST of CB291045 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.851e-72
Identity = 135/174 (77.59%), Postives = 146/174 (83.91%), Query Frame = -1
Query:  138 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSPVACLLLKLVTNGQPTSAFALSSGVGAWNAVVFEIVMPFGLVYTVYATALAPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 659
            NISGGHVNPAVTFGAFVGGNI+LLRGI+Y IAQLLGS VA  LL  VT      AF LS GVG   A+V EIVM FGLVYTVYATA+ PKKG++G IAPIAIGFIVGANIL GGAF GASMNPAVSFGPA+VSWSW NHWVYW GPLIGGG+AG+VYE  FIN +HEQLPTT+Y
Sbjct:   78 NISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVT-ASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVLFINSTHEQLPTTDY 250          
BLAST of CB291045 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 1.049e-69
Identity = 133/174 (76.44%), Postives = 144/174 (82.76%), Query Frame = -1
Query:  138 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSPVACLLLKLVTNGQPTSAFALSSGVGAWNAVVFEIVMPFGLVYTVYATALAPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 659
            NISGGHVNPAV FGAFVGGNI+LLRGI+Y IAQLLGS V   LL  VT      AF LS GVG   A+V EIVM FGLVYTVYATA+ PKKG++G IAPIAIGFIVGANIL GGAF GASMNPAVSFGPA+VSWSW NHWVYW GPLIGGG+AG+VYE  FIN +HEQLPTT+Y
Sbjct:   78 NISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVT-ASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVLFINSTHEQLPTTDY 249          
BLAST of CB291045 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.719e-62
Identity = 107/170 (62.94%), Postives = 132/170 (77.65%), Query Frame = -1
Query:  150 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSPVACLLLKLVTNGQPTSAFALSSGVGAWNAVVFEIVMPFGLVYTVYATALAPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLP 659
            NISGGHVNPAVTFGA VGG +SL+R +LYW+AQLLG+  A LLL+L T G     FAL+SGVG W+AV+ E VM FGL+Y  YAT + PK+G +GTIAP+A+GF++GAN+LAGG FDGA MNPA  FGPALV W W +HWVYW+GP +G GLAG+VYE+  I  +   +P
Sbjct:   82 NISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWLGPFLGAGLAGLVYEYLVIPSADAAVP 251          
The following BLAST results are available for this feature:
BLAST of CB291045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
TIP11_ARATH2.942e-8080.46Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP12_ARATH1.046e-7778.86Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP11_ORYSJ2.331e-7779.31Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP11_MAIZE1.511e-7678.16Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP12_ORYSJ2.850e-7575.43Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP13_ARATH1.729e-7274.29Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP12_MAIZE1.729e-7276.30Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP1_MEDTR3.851e-7277.59Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP1_MEDSA1.049e-6976.44Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP31_MAIZE4.719e-6262.94Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02bb04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bb04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291045 ID=CB291045; Name=CB291045; organism=Citrus sinensis; type=EST; length=701bp
TTTTTTTTTTTTTTTTTGGAAAAGATCAACGGGCCTCCCTTTTAAGGCCA
ATTAAAAATAAAAAGAAAGAACCTCGGTACATACAAATTAAATACAACAT
CCGTGCAAACTCACATAGATGGCAAGCTTTTAGCTTAGTACTCGGTTGTT
GGGAGCTGCTCATGCGACTGGTTAATGAAGAAGAACTCGTAGACGATGCC
AGCTAACCCACCACCGATGAGTGGCCCGACCCAGTAAACCCAGTGGTTGT
CCCAGCTCCAGCTCACCAAAGCTGGCCCGAATGACACTGCTGGGTTCATT
GAAGCTCCATCAAACGCCCCGCCCGCCAAGATGTTGGCTCCTACAATGAA
ACCAATTGCAATTGGGGCAATTGTCCCCAAGCTTCCCTTCTTTGGGGCCA
GGGCTGTGGCATACACTGTGTACACTAGTCCGAATGGCATCACGATCTCG
AAAACGACTGCGTTCCATGCACCAACTCCAGATGAGAGAGCAAAAGCAGA
TGTGGGCTGGCCGTTGGTAACCAACTTAAGAAGCAAGCATGCGACGGGGG
ATCCAAGAAGCTGGGCGATCCAGTAGAGGATGCCACGTAGAAGGGAGATG
TTACCTCCAACGAAGGCGCCAAAGGTGACAGCAGGATTAACGTGGCCACC
GGAAATGTTGGCGCCAACGGCGACAGCAACGAAAAGGGCGAAAGCGTGAG
C
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