CB291049

Overview
NameCB291049
Unique NameCB291049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291049 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.290e-39
Identity = 78/87 (89.66%), Postives = 85/87 (97.70%), Query Frame = -1
Query:  171 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 431
            +VVDFTASWCGPCRFIAPFLAELAKKLPNV FLKVDVDELK+VA +WAVE+MPTFMFLKEGKI+DKVVGAKK+ELQQTIAKH+ATAS
Sbjct:   31 IVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          
BLAST of CB291049 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.177e-38
Identity = 75/84 (89.29%), Postives = 81/84 (96.43%), Query Frame = -1
Query:  180 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 431
            VVVDFTASWCGPCRFIAPF A+LAKKLPNVLFLKVD DELKSVA+DWA++AMPTFMFLKEGKI+DKVVGAKK+ELQ TIAKHLA
Sbjct:   31 VVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          
BLAST of CB291049 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.077e-38
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = -1
Query:  171 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 431
            +VVDFTASWCGPC+FIA F AELAKK+P V FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKK+ELQQTIAKH+++ S
Sbjct:   30 IVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          
BLAST of CB291049 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.632e-34
Identity = 67/87 (77.01%), Postives = 81/87 (93.10%), Query Frame = -1
Query:  171 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 431
            VVVDFTASWCGPCRFIAP LA++AKK+P+V+FLKVDVDELK+V+ +W+VEAMPTF+F+K+GK VD+VVGAKKEELQQTI KH A A+
Sbjct:   37 VVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPAT 123          
BLAST of CB291049 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.024e-28
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = -1
Query:  168 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 431
            V++DFTASWCGPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:   31 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of CB291049 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.024e-28
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = -1
Query:  168 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 431
            V++DFTASWCGPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:   31 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of CB291049 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.295e-27
Identity = 55/87 (63.22%), Postives = 69/87 (79.31%), Query Frame = -1
Query:  171 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 431
            V VDFTA+WCGPCR I P   EL+KK P + FLKVDVDEL+ VA +W VEAMPTF+F+K+GK VDKVVGAKK++L++ +A   A A+
Sbjct:   29 VAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAALAAAAT 115          
BLAST of CB291049 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.252e-26
Identity = 52/82 (63.41%), Postives = 69/82 (84.15%), Query Frame = -1
Query:  186 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 431
            +V+DFTASWC PCRFIAP  AE+AKK  NV+F K+DVDEL++VA ++ VEAMPTF+F+KEG I+D+VVGA K+E+ + + KH
Sbjct:   30 IVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of CB291049 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.215e-26
Identity = 55/89 (61.80%), Postives = 72/89 (80.90%), Query Frame = -1
Query:  168 VVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 431
            +V+DFTASWC PCR IAP  A+LAKK + + +F KVDVDEL++VA ++ VEAMPTF+ +K+G +VDKVVGA+KE+L  TIAKH   A+A
Sbjct:   31 IVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGVATA 119          
BLAST of CB291049 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 8.116e-26
Identity = 54/84 (64.29%), Postives = 66/84 (78.57%), Query Frame = -1
Query:  180 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 431
            VV+DFTASWCGPCR +AP  A+LAKK P  +FLKVDVDELK +A  ++VEAMPTF+F+KEG + D+VVGA KEEL   +  H A
Sbjct:   43 VVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAA 126          
The following BLAST results are available for this feature:
BLAST of CB291049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
TRXH_RICCO1.290e-3989.66Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH3.177e-3889.29Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC7.077e-3886.21Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC1.632e-3477.01Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_ORYSJ1.024e-2865.91Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI1.024e-2865.91Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_PICMA3.295e-2763.22Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH5_ARATH1.252e-2663.41Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_BRANA6.215e-2661.80Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH_WHEAT8.116e-2664.29Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02bb06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bb06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291049 ID=CB291049; Name=CB291049; organism=Citrus sinensis; type=EST; length=893bp
TTTTTTTTTTTTTTTTGAGCTTCTAGAACAGTAAATTACGGAATATTCAA
ACACACAAACAAACACAATCCCATAACCACTCTAATAAGTAAATTACAGA
CTGATAGCATATATTGAGGTCTATAGCCTCTAAAGCCAAAAGGCAGGAGG
ATAGTTATAACTTATTAGGCAGAAGCAGTTGCCAGATGCTTGGCAATAGT
CTGCTGCAGTTCCTCTTTCTTTGCTCCAACCACCTTGTCCACAATCTTCC
CCTCTTTCAGGAACATGAAAGTTGGCATGGCCTCCACTGCCCAGTCAGTG
GCAACACTCTTCAGTTCATCCACATCAACCTTCAGAAACAGGACATTAGG
CAGTTTCTTGGCCAGCTCTGCCAAGAAAGGAGCAATGAAACGGCATGGTC
CGCACCATGAAGCAGTGAAATCAACAACAACCTGTATCAATGAAGGAGCT
CAGGCAATGCCAAACAACTGCTAACAGCAAAACCATCAATCATAATCAAA
TGAGTAGTGCTACACATCCCAAATTTTTTATCCCAAAAAACTATCCTAAA
TGACGTGGCATTTATCAATTTTTTGGTGAGATAATACAATTAATTCACTT
AGATCTTGTAAAGAATTATCAACCACTCAATTAATAACACATCACTTGGT
ATCAAATTTGAGATAAAAGATTTGAGATGTCTATCATTATTCTAATCAAA
TATCCACCACTACTAACAAAAAGAGGTCCACCTCACCAATAAAAACTGGC
GTGACACAATACTACTATGACAATTGACTAAACAGTAATTGAAACAGTCC
AAAAAGAATATAGTGTAATTAGCAGACTATGTCAAGTGAGGTAAATACAA
GTAGGCAGCGCCACAAATATCGTCACTTCGGGCATGGCTAGGG
back to top