CB291075

Overview
NameCB291075
Unique NameCB291075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5845 contig Csv1_Contig5845:628..1495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: ZIP4_ARATH (Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.030e-62
Identity = 127/198 (64.14%), Postives = 141/198 (71.21%), Query Frame = -3
Query:  273 HPHGQHACEGHVKEAXXXXXXXXXXXXXXGFSDGDEESGVRHVVVSQVLEXXXXXXXXXXXXXXXXXXSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKTQSATLMACFFALTTPVGISIGTAAASVYNPNSPGALIVEGILDSMSAGILVYMALVDLIAADFFSKRMSCNFRLQVVFYLMLFLGAGLMSLLAIWA 866
            H +    C+GH                     + D E+G RHVVVSQ+LE                  SPCTIRPLIAALSFHQFFEGFALGGCISQAQF+ +SAT+MACFFALTTP+GI IGTA AS +N +SPGAL+ EGILDS+SAGILVYMALVDLIAADF SKRMSCN RLQVV Y+MLFLGAGLMS LAIWA
Sbjct:  187 HSNSHGTCDGHAH----------GHSHGHMHGNSDVENGARHVVVSQILELGIVSHSIIIGLSLGVSQSPCTIRPLIAALSFHQFFEGFALGGCISQAQFRNKSATIMACFFALTTPLGIGIGTAVASSFNSHSPGALVTEGILDSLSAGILVYMALVDLIAADFLSKRMSCNLRLQVVSYVMLFLGAGLMSALAIWA 374          
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: IRT3_ARATH (Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 2.538e-61
Identity = 128/201 (63.68%), Postives = 143/201 (71.14%), Query Frame = -3
Query:  273 HPHGQHACEGHVK-EAXXXXXXXXXXXXXXGFSDG--DEESGVRHVVVSQVLEXXXXXXXXXXXXXXXXXXSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKTQSATLMACFFALTTPVGISIGTAAASVYNPNSPGALIVEGILDSMSAGILVYMALVDLIAADFFSKRMSCNFRLQVVFYLMLFLGAGLMSLLAIWA 866
            HP G  +CEGH K +               G   G  D  +G RH+VVSQVLE                  SPCTIRPLIAALSFHQFFEGFALGGCISQAQF+ +SAT+MACFFALTTP+GI IGTA AS +N +S GAL+ EGILDS+SAGILVYMALVDLIAADF S +M CNFRLQ+V Y+MLFLGAGLMS LAIWA
Sbjct:  189 HPPGHDSCEGHSKIDIGHAHAHGHGHGHGHGHVHGGLDAVNGARHIVVSQVLELGIVSHSIIIGLSLGVSQSPCTIRPLIAALSFHQFFEGFALGGCISQAQFRNKSATIMACFFALTTPIGIGIGTAVASSFNSHSVGALVTEGILDSLSAGILVYMALVDLIAADFLSTKMRCNFRLQIVSYVMLFLGAGLMSSLAIWA 389          
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: ZIP9_ARATH (Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 8.183e-52
Identity = 102/162 (62.96%), Postives = 124/162 (76.54%), Query Frame = -3
Query:  273 ESGVRHVVVSQVLEXXXXXXXXXXXXXXXXXXSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKTQSATLMACFFALTTPVGISIGTAAASVYNPNSPGALIVEGILDSMSAGILVYMALVDLIAADFFSKRMSCNFRLQVVFYLMLFLGAGLMSLLAIWA 758
            +SGVRHVVVSQ+LE                  SPCTIRPL+ ALSFHQFFEGFALGGC+++A+   + + +MA FFA+TTP+G+++GTA AS YN  S  AL+ EG+LDS+SAGILVYMALVDLIAADF SK+MS +FR+QVV Y  LFLGAG+MS LAIWA
Sbjct:  183 DSGVRHVVVSQILEMGIVSHSIIIGISLGVSHSPCTIRPLLLALSFHQFFEGFALGGCVAEARLTPRGSAMMAFFFAITTPIGVAVGTAIASSYNSYSVAALVAEGVLDSLSAGILVYMALVDLIAADFLSKKMSVDFRVQVVSYCFLFLGAGMMSALAIWA 344          
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: ZIP5_ARATH (Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.657e-36
Identity = 79/155 (50.97%), Postives = 105/155 (67.74%), Query Frame = -3
Query:  273 VVSQVLEXXXXXXXXXXXXXXXXXXSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKTQSATLMACFFALTTPVGISIGTAAASVYNPNSPGALIVEGILDSMSAGILVYMALVDLIAADFFSKRMSCNFRLQVVFYLMLFLGAGLMSLLAIWA 737
            VV+QVLE                  SP T + L AAL FHQ FEG  LGGCI+Q  F   S T+M+ FF++TTPVGI++G A +S Y+ +SP ALIV+G+L++ SAGIL+YM+LVD +AADF   +M  N RLQ++ ++ L +GAG+MSLLA WA
Sbjct:  206 VVAQVLEVGIIVHSVVIGISLGASQSPDTAKALFAALMFHQCFEGLGLGGCIAQGNFNCMSITIMSIFFSVTTPVGIAVGMAISSSYDDSSPTALIVQGVLNAASAGILIYMSLVDFLAADFMHPKMQSNTRLQIMAHISLLVGAGVMSLLAKWA 360          
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: ZIP12_ARATH (Probable zinc transporter 12 OS=Arabidopsis thaliana GN=ZIP12 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.826e-36
Identity = 78/164 (47.56%), Postives = 107/164 (65.24%), Query Frame = -3
Query:  273 DEESGVRHVVVSQVLEXXXXXXXXXXXXXXXXXXSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKTQSATLMACFFALTTPVGISIGTAAASVYNPNSPGALIVEGILDSMSAGILVYMALVDLIAADFFSKRMSCNFRLQVVFYLMLFLGAGLMSLLAIWA 764
            D+   +R  +V+Q+LE                  S  TI+PLIAA++FHQ FEGF LGGCIS+A+F+ +   +M  FFALT P+GI IG   A +YN NSP AL V G L++ ++GIL+YMALVDL+A  F +++   + ++QV   + L +GAGLMSLLAIWA
Sbjct:  192 DDHIDMRKKIVTQILELGIVVHSVIIGISLGASPSVSTIKPLIAAITFHQLFEGFGLGGCISEAKFRVKKIWVMLMFFALTAPIGIGIGIGVAEIYNENSPMALKVSGFLNATASGILIYMALVDLVAPLFMNQKTQSSMKIQVACSVSLVVGAGLMSLLAIWA 355          
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: ZIP3_ARATH (Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.295e-36
Identity = 80/166 (48.19%), Postives = 108/166 (65.06%), Query Frame = -3
Query:  273 DGDEESGVRHVVVSQVLEXXXXXXXXXXXXXXXXXXSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKTQSATLMACFFALTTPVGISIGTAAASVYNPNSPGALIVEGILDSMSAGILVYMALVDLIAADFFSKRMSCNFRLQVVFYLMLFLGAGLMSLLAIWA 770
            D ++   +R  V++QVLE                  SP   + L  AL FHQ FEG  LGGCI+Q +FK  S T+M+ FFA+TTP+GI +G   A+ Y+ +SP ALIV+G+L++ SAGIL+YM+LVDL+AADF   +M  N  LQ++ ++ L LGAGLMSLLA WA
Sbjct:  174 DSEKVQILRTRVIAQVLELGIIVHSVVIGISLGASQSPDAAKALFIALMFHQCFEGLGLGGCIAQGKFKCLSVTIMSTFFAITTPIGIVVGMGIANSYDESSPTALIVQGVLNAASAGILIYMSLVDLLAADFTHPKMQSNTGLQIMAHIALLLGAGLMSLLAKWA 339          
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: ZIP1_ARATH (Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.080e-35
Identity = 83/161 (51.55%), Postives = 104/161 (64.60%), Query Frame = -3
Query:  273 VRHVVVSQVLEXXXXXXXXXXXXXXXXXXSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKTQSATLMACFFALTTPVGISIGTAAASV--YNPNSPGALIVEGILDSMSAGILVYMALVDLIAADFFSKRMSCNFRLQVVFYLMLFLGAGLMSLLAIWA 749
            +R  +VSQVLE                  S  TI+PL+AALSFHQFFEG  LGGCIS A  K++S  LMA FF++T P+GI IG   +S   Y   S  A++VEG+L++ SAGIL+YM+LVDL+A DF + R+  N  L +  YL L LGAG MSLLAIWA
Sbjct:  195 IRRRIVSQVLEIGIVVHSVIIGISLGASQSIDTIKPLMAALSFHQFFEGLGLGGCISLADMKSKSTVLMATFFSVTAPLGIGIGLGMSSGLGYRKESKEAIMVEGMLNAASAGILIYMSLVDLLATDFMNPRLQSNLWLHLAAYLSLVLGAGSMSLLAIWA 355          
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: ZIP6_ARATH (Zinc transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ZIP6 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.714e-33
Identity = 81/162 (50.00%), Postives = 102/162 (62.96%), Query Frame = -3
Query:  273 VVSQVLEXXXXXXXXXXXXXXXXXXSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKTQSATLMACFFALTTPVGISIGTA--AASVYNPNSPGALIVEGILDSMSAGILVYMALVDLIAADFFSKRM-----SCNFRLQVVFYLMLFLGAGLMSLLAIWA 737
            +VSQVLE                  + CTIRPLIAALSFHQ FEG  LGGCI+QA FK  +   M   FA+TTP+GI +G    AA+ Y+  +P ALI+EG+L S S+GIL+YMALVDLIA DFF  +M         RL+ + ++ L LG+  MSLLA+WA
Sbjct:  180 LVSQVLEIGIIFHSVIIGVTMGMSQNKCTIRPLIAALSFHQIFEGLGLGGCIAQAGFKAGTVVYMCLMFAVTTPLGIVLGMVIFAATGYDDQNPNALIMEGLLGSFSSGILIYMALVDLIALDFFHNKMLTTCGESGSRLKKLCFVALVLGSASMSLLALWA 341          
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: ZIP10_ARATH (Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.895e-32
Identity = 74/171 (43.27%), Postives = 106/171 (61.99%), Query Frame = -3
Query:  273 DGDEESG-----VRHVVVSQVLEXXXXXXXXXXXXXXXXXXSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKTQSATLMACFFALTTPVGISIGTAAASVYNPNSPGALIVEGILDSMSAGILVYMALVDLIAADFFSKRMSCNFRLQVVFYLMLFLGAGLMSLLAIWA 770
            + D+E G     +R+ +++ VLE                  + CTI+ L+AAL FHQ FEG  LGGCI QA++      +MA FFA+TTP G+ +G A +  Y  NSP +LI  G+L++ SAG+L+YMALVDL+AADF  ++M  + +LQ+  Y  + LGAG MS++A WA
Sbjct:  194 ENDKELGSYLQLLRYRILAIVLELGIVVQSIVIGLSVGDTNNTCTIKGLVAALCFHQMFEGMGLGGCILQAEYGWVKKAVMAFFFAVTTPFGVVLGMALSKTYKENSPESLITVGLLNASSAGLLIYMALVDLLAADFMGQKMQRSIKLQLKSYAAVLLGAGGMSVMAKWA 364          
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: ZIP7_ARATH (Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.475e-32
Identity = 72/159 (45.28%), Postives = 102/159 (64.15%), Query Frame = -3
Query:  273 VRHVVVSQVLEXXXXXXXXXXXXXXXXXXSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKTQSATLMACFFALTTPVGISIGTAAASVYNPNSPGALIVEGILDSMSAGILVYMALVDLIAADFFSKRMSCNFRLQVVFYLMLFLGAGLMSLLAIWA 749
            +R+ V++Q+LE                  + CT++ LIAAL FHQ FEG  LGG I QAQFK+++   M  FF++TTP GI +G A   +Y+  SP ALIV G+L++ SAG+L+YMALV+L+A +FF  ++  N +L V+ Y+  F GA  MSL+A WA
Sbjct:  207 LRNKVIAQILELGIVVHSVVIGLAMGASDNKCTVQSLIAALCFHQLFEGMGLGGSILQAQFKSKTNWTMVFFFSVTTPFGIVLGMAIQKIYDETSPTALIVVGVLNACSAGLLIYMALVNLLAHEFFGPKIQGNIKLHVLGYVATFTGAAGMSLMAKWA 365          
The following BLAST results are available for this feature:
BLAST of CB291075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ZIP4_ARATH1.030e-6264.14Zinc transporter 4, chloroplastic OS=Arabidopsis t... [more]
IRT3_ARATH2.538e-6163.68Fe(2+) transport protein 3, chloroplastic OS=Arabi... [more]
ZIP9_ARATH8.183e-5262.96Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9... [more]
ZIP5_ARATH1.657e-3650.97Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5... [more]
ZIP12_ARATH2.826e-3647.56Probable zinc transporter 12 OS=Arabidopsis thalia... [more]
ZIP3_ARATH6.295e-3648.19Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3... [more]
ZIP1_ARATH4.080e-3551.55Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1... [more]
ZIP6_ARATH1.714e-3350.00Zinc transporter 6, chloroplastic OS=Arabidopsis t... [more]
ZIP10_ARATH1.895e-3243.27Probable zinc transporter 10 OS=Arabidopsis thalia... [more]
ZIP7_ARATH2.475e-3245.28Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02bc10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bc10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291075 ID=CB291075; Name=CB291075; organism=Citrus sinensis; type=EST; length=868bp
TTTTTTTTTTCCTAAAGAACTTTTTGACTTTATTAATTCGCTCATCAGCT
ACAATCTGTATTAAGAGAGTAAATTTTCATACCTAATGATACATTATCAC
AATCTAAGGATACAATTTCTTGCTTCTCTCCTTGCACCTATGCTTCCCCT
ACTAAAGCAATTTTATGAAAGAATTGAACAAATTTCTCTTCATGTTGCTC
TGAAAACAATAAAAAAAATTAAAGGTGGGGGAGGAGATAAATAACCAAAA
GACATAGTCTAATAGTTTGTCAAGCCCAAATTGCAAGCAAAGACATCAAT
CCAGCTCCAAGAAACAGCATCAAATAAAACACTACTTGAAGCCTAAAATT
GCAGCTCATCCTTTTACTGAAAAAATCTGCTGCAATTAGATCCACTAAAG
CCATGTACACCAAAATGCCGGCTGACATTGAATCTAAAATTCCTTCAACA
ATCAAAGCACCTGGGCTGTTTGGGTTGTAAACTGAAGCAGCTGCAGTACC
GATGCTGATCCCTACTGGAGTTGTTAAGGCGAAAAAACATGCCATTAACG
TGGCTGATTGGGTCTTGAATTGAGCTTGCGAGATGCAACCTCCAAGTGCA
AATCCTTCAAAGAATTGATGGAAGGATAACGCTGCTATCAAGGGTCTTAT
TGTACATGGACTGTGTGAAACTCCAAGCGATATCCCAATGATAATCGAGT
GTGAAACAATTCCAAGTTCCAAAACCTGGGAAACGACGACGTGCCGAACC
CCGCTTTCCTCATCCCCATCACTAAACCCGTGAGAATGCCCATGCCCGAG
CCCCTGCCCGTGTTCATGGCCAGCCTCCTTCACGTGCCCCTCACATGCGT
GTTGCCCATGAGGATGAT
back to top