CB291078

Overview
NameCB291078
Unique NameCB291078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2092 contig Csv1_Contig2092:1156..2022. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB291078 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.237e-40
Identity = 77/96 (80.21%), Postives = 88/96 (91.67%), Query Frame = -2
Query:  580 IVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 867
            IVIKHL ++QE NQ+NF D+ T+AELEVQEK  LLEWFANEY+RFGCTLEFVTNKSQEGSQFCRGFGGIGG+LRYQLDMR+FDE S DGE+Y+DS+
Sbjct:  341 IVIKHLGKDQENNQSNFHDAETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGLLRYQLDMRTFDELS-DGEVYEDSD 435          
BLAST of CB291078 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.968e-37
Identity = 72/96 (75.00%), Postives = 86/96 (89.58%), Query Frame = -2
Query:  580 IVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 867
            +V+KH  ++QE++ +NF DS T+AELEVQEK  LLEWFANEY+RFGCTLEFVTNKSQEGSQFCRGFGGIGG+LRYQLDMR+FDE SD  E+Y+DS+
Sbjct:  340 MVVKHFGKDQESDTSNFHDSETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGMLRYQLDMRTFDELSDT-EVYEDSD 434          
BLAST of CB291078 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.252e-33
Identity = 69/93 (74.19%), Postives = 77/93 (82.80%), Query Frame = -2
Query:  586 VIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 864
            VIKHLN+EQE N  NF+ + +   L+V+EK SLLEW ANEYRRFGC LEFVTNKSQEGSQFCRGFGGIGGILRYQLDM +FD  S+DGE  DD
Sbjct:  343 VIKHLNKEQEANTENFKVADSDLALDVEEKLSLLEWLANEYRRFGCALEFVTNKSQEGSQFCRGFGGIGGILRYQLDMTAFD--SEDGEALDD 433          
BLAST of CB291078 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.706e-23
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = -2
Query:  586 IKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 861
            I  L  +QE ++ +F D  T  E+E+ E  SLLEWFAN Y++FG TLE VT++SQEGSQF +GFGGIGG+LRY++D +  +   DD ++YDD
Sbjct:  343 ILFLKPDQEKDKTHFTDKDTGVEMEMVESCSLLEWFANNYKKFGSTLEIVTDRSQEGSQFVKGFGGIGGMLRYRIDFQGMEFNDDDPDLYDD 434          
BLAST of CB291078 vs. ExPASy Swiss-Prot
Match: ERF1_DICDI (Eukaryotic peptide chain release factor subunit 1 OS=Dictyostelium discoideum GN=erf1 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.147e-23
Identity = 47/92 (51.09%), Postives = 68/92 (73.91%), Query Frame = -2
Query:  580 LNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSD-DGEIYDDSE 852
            LN++Q  + + F+D  +  + E+ E+  ++EWFAN Y+ FG +LEFVTNKSQEGSQFC+GFGG+GG+LRYQ+D    ++F + D   YDDS+
Sbjct:  347 LNKDQNKDASVFKDKESGLDYEIVEEMPIVEWFANNYKNFGASLEFVTNKSQEGSQFCKGFGGLGGLLRYQVDFAQLNDFDNPDENEYDDSD 438          
BLAST of CB291078 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.336e-22
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  586 IKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRS--FDEFSDDGEIYDD 861
            + HL  EQE ++++F D  +  E+E+ E   LLEW AN Y+ FG TLE +T+KSQEGSQF RGFGGIGGILRY++D +S   DE  +DG   DD
Sbjct:  344 VLHLTPEQEKDKSHFTDKESGVEMELIESQPLLEWLANNYKMFGATLEIITDKSQEGSQFVRGFGGIGGILRYKVDFQSMQLDELDNDGFDLDD 437          
BLAST of CB291078 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 1.159e-21
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  589 IKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 861
            I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  343 ILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of CB291078 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 1.159e-21
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  589 IKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 861
            I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  343 ILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of CB291078 vs. ExPASy Swiss-Prot
Match: ERF1_PONAB (Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii GN=ETF1 PE=2 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 1.159e-21
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  589 IKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 861
            I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  343 ILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of CB291078 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 103.99 bits (258), Expect = 1.159e-21
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  589 IKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 861
            I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  343 ILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
The following BLAST results are available for this feature:
BLAST of CB291078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ERF1Z_ARATH4.237e-4080.21Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH1.968e-3775.00Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH2.252e-3374.19Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_POLMI4.706e-2353.26Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DICDI6.147e-2351.09Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DROME2.336e-2254.26Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT1.159e-2153.85Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT1.159e-2153.85Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PONAB1.159e-2153.85Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MOUSE1.159e-2153.85Eukaryotic peptide chain release factor subunit 1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02bc11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bc11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291078 ID=CB291078; Name=CB291078; organism=Citrus sinensis; type=EST; length=868bp
TTTTTTTTTTTTTTTTAACAAACAGTATCACTTTATTATTATACCAAGCC
ATGGCCTACCAAAGATGGAGATCTAACAAGCATGCCTTAAACAACATAAC
CTTAAACAAATAACCCAGTCCGATAGACAACAGGAGATCCATCACACTAA
TTAACATGCATTGTACAAACAATAGAACCATAAAAAGATAAACCCAAGTC
TGAGAGAACAGTTTCAATCCACAAGCCCCTAGGGCTTGCCATGGGAGAGA
TCCCCATATCCATCATCTGAATGCGAGGTATTCGTAAGGTCCTCTCCAAC
ATTAGCTAGTAGCTTTGCATAATTCCTCCCTTCTGGAGCTAGTAGCTTTG
CATAATTCCTCCCTTCTGGATCATACCCAGCAGCGCCATTACAAAGCCCA
TATAACAGAATCATAGATAGCTTGCTCAGCTAAGACACGACATAAACGTA
CCTCAGCAGCAACTTGGGAACATTTTGGAACATAGGTACTCCAAAGTTGG
CGCGACGAATCGCGCGCTGGTGCAGGCCCTTCACGTCGTCATCCTGCACC
AGCAATGGGGTAGGTTTGATTGATTGCTATTCAGAATCATCATAAATTTC
TCCATCATCAGAAAACTCATCAAATGATCTCATATCAAGCTGGTAGCGGA
GTATTCCACCAATACCACCAAAGCCTCTGCAAAACTGGGATCCCTCTTGT
GATTTGTTGGTAACAAACTCGAGTGTGCAACCAAACCTCCTGTATTCATT
TGCAAACCACTCAAGCAGCGATGACTTTTCCTGAACCTCCAATTCAGCAG
AGGTGGCAGAATCACGAAAGTTGTTCTGATTGGTCTCTTGCTCCCTGTTC
AAATGTTTTATGACAATC
back to top