CB291285

Overview
NameCB291285
Unique NameCB291285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291285 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.495e-39
Identity = 94/175 (53.71%), Postives = 117/175 (66.86%), Query Frame = -1
Query:  198 VYQFSSVK--YLPGTLQRNVSLSVRCMAKNEQQKDQ-----------STQPP-----KVPRISTKFFDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVSWFLGTXXXXXXXXXVPLFKGVSVEFKSDGFMTLDAELGNGRFAMMGFVALAVPEFVKGSTLV 668
            V QF+++   Y+P TL+RNVSL VR MA+ E ++             ST  P     + P++STKF D+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ +  QLS GGV+WFLGT         +P F+GVSVE KS   M+ DAE  NGR AM+G VALA  EFVKG++LV
Sbjct:   23 VNQFTNIPSVYIP-TLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CB291285 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 74/157 (47.13%), Postives = 101/157 (64.33%), Query Frame = -1
Query:  198 LQRNVSLSVRCMAKN------EQQKDQSTQP------PKVPRISTK-FFDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVSWFLGTXXXXXXXXXVPLFKGVSVEFKSDGFMTLDAELGNGRFAMMGFVALAVPEFVKGSTLV 629
            ++RN   +VR M ++      +QQK Q T        P    ++TK   D+F+F G APERINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL T         +P+++G+S E K++GF   DAE+ NGRFAM+G VALA  E+VKG  L+
Sbjct:   41 MRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CB291285 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.069e-27
Identity = 68/156 (43.59%), Postives = 90/156 (57.69%), Query Frame = -1
Query:  198 FSSVKYLP-GTLQRNVSLSVRCMAKNEQQKDQSTQPPKVPRISTKFFDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVSWFLGTXXXXXXXXXVPLFKGVSVEFKSDGFMTLDAELGNGRFAMMGFVALAVPEFVKGSTLV 659
            F+    LP G+ +   +L  R +    Q +  +  PP  P+ ST  +D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G +WF  T         VPL +G S E ++   M  +AEL NGRFAM+G VALA  E + G+  +
Sbjct:   10 FAGAAVLPRGSARSLPALGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFI 165          
BLAST of CB291285 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.235e-27
Identity = 65/140 (46.43%), Postives = 83/140 (59.29%), Query Frame = -1
Query:  198 SLSVRCMAKNEQQKDQSTQPPKVPRISTKFFDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVSWFLGTXXXXXXXXXVPLFKGVSVEFKSDGFMTLDAELGNGRFAMMGFVALAVPEFVKGSTLV 614
            +L  R +    Q +  S  PP  P+ ST  +D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G +WF  T         VPL +G S E ++   M  +AEL NGRFAM+G VALA  E + G+  +
Sbjct:   31 ALGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CB291285 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.560e-26
Identity = 70/176 (39.77%), Postives = 94/176 (53.41%), Query Frame = -1
Query:  198 LGSSVVAARVTGTRKFGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKVPRISTKFFDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS--DGGVSWFLGTXXXXXXXXXVPLFKGVSVEFKSDGFMTLDAELGNGRFAMMGFVALAVPEFVKGSTLV 719
            L +S + +R+  T    VY    +     T   + S S             +   P   + +   +D  AFSGPAPERINGRLAM+GFVAAL+VE ++G  +  Q+     G++WFL T         +PL +G SVE KS G  + DAEL NGRFAM+G VALA  EF+ G+  V
Sbjct:   54 LPASTITSRLDLTVNLFVYVQPDMDSAKETTSASTSPSPSQYTSPSPTTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CB291285 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14
Identity = 62/163 (38.04%), Postives = 79/163 (48.47%), Query Frame = -1
Query:  201 SSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKVPR--------ISTKFFDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVSWFLGTXXXXXXXXXVPLF---KGVSVEFKSDGFMTLDAELGNGRFAMMGFVALAVPEFVKGSTL 656
            +S+   P  L R  +    C      + + ST PP  P          +    +V  FSG APE INGRLAM+GFVAAL  ELS G+ V  QL D      L T         +P F   KG ++     G  T DAE+ NGRFAM+GF A+ V E ++G  L
Sbjct:   16 ASINVRPAPLLRTAAPKRVCKHIVRAENNPSTPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAFARRKGDAM-----GPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIAL 171          
The following BLAST results are available for this feature:
BLAST of CB291285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA3.495e-3953.71Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL2.271e-3047.13Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI6_HORVU3.069e-2743.59Low molecular mass early light-inducible protein H... [more]
ELI9_HORVU5.235e-2746.43Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU7.560e-2639.77High molecular mass early light-inducible protein ... [more]
CBR_DUNBA5.083e-1438.04Carotene biosynthesis-related protein CBR, chlorop... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02cf07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02cf07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291285 ID=CB291285; Name=CB291285; organism=Citrus sinensis; type=EST; length=728bp
TTTTCAAACGGAAAAGGGTGCCTTTTTTAGAGAATTGGCCTGGGAAAACA
AAGATTTCCTTCCTACACCACCATAATTCATACGCAATAATTACCCACGG
AAAAAACATGACGTGCGCTTCAAGTATTAAGGATAGGGTCTTGTTATCAT
TTCAAAACTCCGCAGTCCCCATATCACTGGAAAATTGGACTTAACTAAAC
AAGGGTACTGCCTTTAACAAACTCAGGGACAGCCAAAGCAACAAAACCCA
TCATAGCAAACCTCCCATTCCCCAACTCAGCATCCAAAGTCATGAACCCA
TCCGATTTAAACTCCACGCTGACACCTTTAAACAAAGGAACCAGGGACCC
AACCGAAAGCAAAACACTGGTCCCCAAAAACCAGGAAACTCCACCGTCTG
ATAACTGGGCAAACACATCCTGACCCTTGGATAGCTCCACCGCCAATGCA
GCCACAAACCCAATCATCGCGAGCCTCCCGTTTATCCTCTCCGGTGCCGG
CCCGCTGAACGCAAACACGTCAAAAAACTTCGTGCTTATACGCGGTACCT
TTGGTGGCTGAGTTGATTGATCCTTCTGCTGCTCATTCTTAGCCATGCAG
CGCACTGATAAGCTAACATTTCTCTGCAGAGTACCAGGTAAGTACTTAAC
AGAGGAAAATTGGTACACCCCAAATTTCCTGGTGCCGGTAACACGAGCTG
CGACGACAGAGCTTCCAAGCATAAATTG
back to top