CB291299

Overview
NameCB291299
Unique NameCB291299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMD1_ARATH (GDP-mannose 4,6 dehydratase 1 OS=Arabidopsis thaliana GN=GMD1 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 7.458e-66
Identity = 115/150 (76.67%), Postives = 132/150 (88.00%), Query Frame = -2
Query:  178 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVGLNWKDHVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKVFVDVGYMAAHQHP 627
            FV RKITRA+GRIK+GLQ+KLFLGN QASRDWGFAGDYVEAMW+M  QE PDDYVVATEESH V+EFL+V+FGYVGLNWKDHV IDKRYF P EVDNLKGD++K +++LGW P+VGF++LVKMMVDE++EL KREKV  D GYM A Q P
Sbjct:  212 FVTRKITRALGRIKVGLQTKLFLGNIQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEESHTVKEFLDVSFGYVGLNWKDHVEIDKRYFRPTEVDNLKGDASKAKEMLGWKPKVGFEKLVKMMVDEDLELAKREKVLADAGYMDAQQQP 361          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMD2_ARATH (GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thaliana GN=MUR1 PE=1 SV=3)

HSP 1 Score: 246.899 bits (629), Expect = 6.314e-65
Identity = 114/150 (76.00%), Postives = 133/150 (88.67%), Query Frame = -2
Query:  178 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVGLNWKDHVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKVFVDVGYMAAHQHP 627
            FV RKITRA+GRIK+GLQ+KLFLGN QASRDWGFAGDYVEAMW+M  QE PDDYVVATEE H VEEFL+V+FGY+GLNWKD+V ID+RYF PAEVDNL+GD++K ++VLGW P+VGF++LVKMMVDE++EL KREKV VD GYM A Q P
Sbjct:  224 FVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGYMDAKQQP 373          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GM4D_PSEAE (GDP-mannose 4,6-dehydratase OS=Pseudomonas aeruginosa GN=gca PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 5.570e-37
Identity = 72/135 (53.33%), Postives = 96/135 (71.11%), Query Frame = -2
Query:  223 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVGLNWKDHVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKRE 627
            FV RK+T AV RIK+G Q +L LGN  A RDWGFAGDYVEAMW+M  Q+  DDYVVAT  +  V +  ++AF +VGL+++D + ID  +F PAEVD L G+  K ++VLGW PR   D+L++MMV+ ++  V RE
Sbjct:  189 FVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVSRE 323          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMDS_HUMAN (GDP-mannose 4,6 dehydratase OS=Homo sapiens GN=GMDS PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.790e-31
Identity = 67/150 (44.67%), Postives = 93/150 (62.00%), Query Frame = -2
Query:  229 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNW---------------KDHVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVK 627
            FV RKI+R+V +I +G      LGN  A RDWG A DYVEAMW+M   + P+D+V+AT E H V EF+E +F ++G  + W               K HV +D +Y+ P EVD L+GD TK ++ L W PRV FD+LV+ MV  ++EL++
Sbjct:  218 FVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMR 367          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMDS_MOUSE (GDP-mannose 4,6 dehydratase OS=Mus musculus GN=Gmds PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.735e-30
Identity = 66/150 (44.00%), Postives = 93/150 (62.00%), Query Frame = -2
Query:  229 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNW---------------KDHVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVK 627
            FV RKI+R+V +I +G      LGN  A RDWG A DYVEAMW+M   + P+D+V+AT E H V EF+E +F ++G  + W               K HV +D +Y+ P EVD L+GD +K ++ L W PRV FD+LV+ MV  ++EL++
Sbjct:  218 FVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFMHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCSKAQQKLNWKPRVAFDELVREMVQADVELMR 367          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMDS_CRIGR (GDP-mannose 4,6 dehydratase OS=Cricetulus griseus GN=GMDS PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.735e-30
Identity = 66/150 (44.00%), Postives = 93/150 (62.00%), Query Frame = -2
Query:  229 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNW---------------KDHVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVK 627
            FV RKI+R+V +I +G      LGN  A RDWG A DYVEAMW+M   + P+D+V+AT E H V EF+E +F ++G  + W               K HV +D +Y+ P EVD L+GD +K ++ L W PRV FD+LV+ MV  ++EL++
Sbjct:  218 FVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFMHIGKTIVWEGKNENEVGRCKETGKIHVTVDLKYYRPTEVDFLQGDCSKAQQKLNWKPRVAFDELVREMVQADVELMR 367          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMDS_DICDI (GDP-mannose 4,6 dehydratase OS=Dictyostelium discoideum GN=gmd PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.273e-29
Identity = 68/150 (45.33%), Postives = 88/150 (58.67%), Query Frame = -2
Query:  229 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAF-----------------GYVGLNWKDHVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVK 627
            FV RKITR V  I  G    L+LGN  A RDWG A DYVEAMW+M  QE P+D+V+AT E+H V EF+E +F                 GY     K +V ID++Y+ P EVD L G+  K +K+L W  +  F +LVK MV ++IE +K
Sbjct:  201 FVTRKITRFVAGIACGRDEILYLGNINAKRDWGHARDYVEAMWLMLQQEKPEDFVIATGETHSVREFVEKSFKEIDIIIKWRGEAEKEEGYCEKTGKVYVKIDEKYYRPTEVDLLLGNPNKAKKLLQWQIKTSFGELVKEMVAKDIEYIK 350          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMDS_DROME (GDP-mannose 4,6 dehydratase OS=Drosophila melanogaster GN=Gmd PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.244e-28
Identity = 66/154 (42.86%), Postives = 91/154 (59.09%), Query Frame = -2
Query:  217 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNWKD---------------HVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKV 627
            FV RKITR+V +I         LGN  + RDWG A DYVEAMWMM  +E+P DYV+AT E+H V EF+E AF ++   + WK                 V I+ +YF P EVD L+GD++K  + L W P+V F +LV  M+  +IEL+++  +
Sbjct:  241 FVTRKITRSVAKIYHKQMEYFELGNLDSKRDWGHASDYVEAMWMMLQRESPSDYVIATGETHSVREFVEAAFKHIDREITWKGKGVDEVGVENGTGIVRVRINPKYFRPTEVDLLQGDASKANRELNWTPKVTFVELVSDMMKADIELMRKNPI 394          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GM4D_SHIFL (GDP-mannose 4,6-dehydratase OS=Shigella flexneri GN=gmd PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.345e-27
Identity = 64/173 (36.99%), Postives = 90/173 (52.02%), Query Frame = -2
Query:  190 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVGLNWKDH---------------------------VVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKVFVDVGYMAA 627
            FV RKITRA+  I  GL+S L+LGN  + RDWG A DYV+  WMM  QE P+D+V+AT   + V +F+E+A   +G+  +                             + +D RYF PAEV+ L GD TK  + LGW P +   ++V  MV  ++E  K+  +    GY  A
Sbjct:  196 FVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGYDVA 368          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GM4D_ECOLI (GDP-mannose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=gmd PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.345e-27
Identity = 64/173 (36.99%), Postives = 90/173 (52.02%), Query Frame = -2
Query:  190 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVGLNWKDH---------------------------VVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKVFVDVGYMAA 627
            FV RKITRA+  I  GL+S L+LGN  + RDWG A DYV+  WMM  QE P+D+V+AT   + V +F+E+A   +G+  +                             + +D RYF PAEV+ L GD TK  + LGW P +   ++V  MV  ++E  K+  +    GY  A
Sbjct:  196 FVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGYDVA 368          
The following BLAST results are available for this feature:
BLAST of CB291299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GMD1_ARATH7.458e-6676.67GDP-mannose 4,6 dehydratase 1 OS=Arabidopsis thali... [more]
GMD2_ARATH6.314e-6576.00GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thali... [more]
GM4D_PSEAE5.570e-3753.33GDP-mannose 4,6-dehydratase OS=Pseudomonas aerugin... [more]
GMDS_HUMAN7.790e-3144.67GDP-mannose 4,6 dehydratase OS=Homo sapiens GN=GMD... [more]
GMDS_MOUSE1.735e-3044.00GDP-mannose 4,6 dehydratase OS=Mus musculus GN=Gmd... [more]
GMDS_CRIGR1.735e-3044.00GDP-mannose 4,6 dehydratase OS=Cricetulus griseus ... [more]
GMDS_DICDI3.273e-2945.33GDP-mannose 4,6 dehydratase OS=Dictyostelium disco... [more]
GMDS_DROME1.244e-2842.86GDP-mannose 4,6 dehydratase OS=Drosophila melanoga... [more]
GM4D_SHIFL2.345e-2736.99GDP-mannose 4,6-dehydratase OS=Shigella flexneri G... [more]
GM4D_ECOLI2.345e-2736.99GDP-mannose 4,6-dehydratase OS=Escherichia coli (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02cg03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02cg03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291299 ID=CB291299; Name=CB291299; organism=Citrus sinensis; type=EST; length=628bp
TTTTGGGAAAAACCAATTTCATCTTCCTGGAATTAACGAATGGAGTTTCC
AAGATTCAAACCACTTAAAACCTGAAATAACCCTTGAACTAAATAAATAT
TCTCCCCAAAAATCAAACCCTAAAAAGCACTCCAGCATTAACTTAAAAAT
AATACAAAAAGGGGAAAACCAAATCTAAGGGTGCTGGTGAGCGGCCATGT
ATCCAACATCAACAAAAACTTTCTCTCTTTTAACCAATTCAATATTTTCA
TCAACCATCATCTTCACCAACTGGTCAAAACCAACTCGAGGGTTCCAGCC
AAGCACTTTCCTGGGCTTGGTTGAATCCCCCTTCAAATTATCAACCTCAG
CTGGGCTAAAATACCTCTTATCGATCACCACATGATCCTTCCAATTCAAC
CCCACATACCCAAACGCGACCTCCAAAAACTCCTCCACTGGATGGGACTC
CTCCGTTGCCACCACGTAATCATCCGGGTTCTCCTGGGGGAACATCATCC
ACATTGCCTCCACGTAGTCTCCCGCAAATCCCCAATCCCTCGACGCTTGG
AAATTACCCAAAAACAATTTACTCTGCAATCCTATCTTGATCCTCCCAAC
CGCACGCGTAATTTTTCTAGGAACAAAA
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