CB291299
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMD1_ARATH (GDP-mannose 4,6 dehydratase 1 OS=Arabidopsis thaliana GN=GMD1 PE=2 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 7.458e-66 Identity = 115/150 (76.67%), Postives = 132/150 (88.00%), Query Frame = -2 Query: 178 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVGLNWKDHVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKVFVDVGYMAAHQHP 627 FV RKITRA+GRIK+GLQ+KLFLGN QASRDWGFAGDYVEAMW+M QE PDDYVVATEESH V+EFL+V+FGYVGLNWKDHV IDKRYF P EVDNLKGD++K +++LGW P+VGF++LVKMMVDE++EL KREKV D GYM A Q P Sbjct: 212 FVTRKITRALGRIKVGLQTKLFLGNIQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEESHTVKEFLDVSFGYVGLNWKDHVEIDKRYFRPTEVDNLKGDASKAKEMLGWKPKVGFEKLVKMMVDEDLELAKREKVLADAGYMDAQQQP 361
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMD2_ARATH (GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thaliana GN=MUR1 PE=1 SV=3) HSP 1 Score: 246.899 bits (629), Expect = 6.314e-65 Identity = 114/150 (76.00%), Postives = 133/150 (88.67%), Query Frame = -2 Query: 178 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVGLNWKDHVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKVFVDVGYMAAHQHP 627 FV RKITRA+GRIK+GLQ+KLFLGN QASRDWGFAGDYVEAMW+M QE PDDYVVATEE H VEEFL+V+FGY+GLNWKD+V ID+RYF PAEVDNL+GD++K ++VLGW P+VGF++LVKMMVDE++EL KREKV VD GYM A Q P Sbjct: 224 FVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGYMDAKQQP 373
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GM4D_PSEAE (GDP-mannose 4,6-dehydratase OS=Pseudomonas aeruginosa GN=gca PE=1 SV=2) HSP 1 Score: 154.066 bits (388), Expect = 5.570e-37 Identity = 72/135 (53.33%), Postives = 96/135 (71.11%), Query Frame = -2 Query: 223 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVGLNWKDHVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKRE 627 FV RK+T AV RIK+G Q +L LGN A RDWGFAGDYVEAMW+M Q+ DDYVVAT + V + ++AF +VGL+++D + ID +F PAEVD L G+ K ++VLGW PR D+L++MMV+ ++ V RE Sbjct: 189 FVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVSRE 323
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMDS_HUMAN (GDP-mannose 4,6 dehydratase OS=Homo sapiens GN=GMDS PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 7.790e-31 Identity = 67/150 (44.67%), Postives = 93/150 (62.00%), Query Frame = -2 Query: 229 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNW---------------KDHVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVK 627 FV RKI+R+V +I +G LGN A RDWG A DYVEAMW+M + P+D+V+AT E H V EF+E +F ++G + W K HV +D +Y+ P EVD L+GD TK ++ L W PRV FD+LV+ MV ++EL++ Sbjct: 218 FVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMR 367
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMDS_MOUSE (GDP-mannose 4,6 dehydratase OS=Mus musculus GN=Gmds PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.735e-30 Identity = 66/150 (44.00%), Postives = 93/150 (62.00%), Query Frame = -2 Query: 229 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNW---------------KDHVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVK 627 FV RKI+R+V +I +G LGN A RDWG A DYVEAMW+M + P+D+V+AT E H V EF+E +F ++G + W K HV +D +Y+ P EVD L+GD +K ++ L W PRV FD+LV+ MV ++EL++ Sbjct: 218 FVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFMHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCSKAQQKLNWKPRVAFDELVREMVQADVELMR 367
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMDS_CRIGR (GDP-mannose 4,6 dehydratase OS=Cricetulus griseus GN=GMDS PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.735e-30 Identity = 66/150 (44.00%), Postives = 93/150 (62.00%), Query Frame = -2 Query: 229 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNW---------------KDHVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVK 627 FV RKI+R+V +I +G LGN A RDWG A DYVEAMW+M + P+D+V+AT E H V EF+E +F ++G + W K HV +D +Y+ P EVD L+GD +K ++ L W PRV FD+LV+ MV ++EL++ Sbjct: 218 FVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFMHIGKTIVWEGKNENEVGRCKETGKIHVTVDLKYYRPTEVDFLQGDCSKAQQKLNWKPRVAFDELVREMVQADVELMR 367
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMDS_DICDI (GDP-mannose 4,6 dehydratase OS=Dictyostelium discoideum GN=gmd PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 3.273e-29 Identity = 68/150 (45.33%), Postives = 88/150 (58.67%), Query Frame = -2 Query: 229 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAF-----------------GYVGLNWKDHVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVK 627 FV RKITR V I G L+LGN A RDWG A DYVEAMW+M QE P+D+V+AT E+H V EF+E +F GY K +V ID++Y+ P EVD L G+ K +K+L W + F +LVK MV ++IE +K Sbjct: 201 FVTRKITRFVAGIACGRDEILYLGNINAKRDWGHARDYVEAMWLMLQQEKPEDFVIATGETHSVREFVEKSFKEIDIIIKWRGEAEKEEGYCEKTGKVYVKIDEKYYRPTEVDLLLGNPNKAKKLLQWQIKTSFGELVKEMVAKDIEYIK 350
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMDS_DROME (GDP-mannose 4,6 dehydratase OS=Drosophila melanogaster GN=Gmd PE=1 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 1.244e-28 Identity = 66/154 (42.86%), Postives = 91/154 (59.09%), Query Frame = -2 Query: 217 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNWKD---------------HVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKV 627 FV RKITR+V +I LGN + RDWG A DYVEAMWMM +E+P DYV+AT E+H V EF+E AF ++ + WK V I+ +YF P EVD L+GD++K + L W P+V F +LV M+ +IEL+++ + Sbjct: 241 FVTRKITRSVAKIYHKQMEYFELGNLDSKRDWGHASDYVEAMWMMLQRESPSDYVIATGETHSVREFVEAAFKHIDREITWKGKGVDEVGVENGTGIVRVRINPKYFRPTEVDLLQGDASKANRELNWTPKVTFVELVSDMMKADIELMRKNPI 394
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GM4D_SHIFL (GDP-mannose 4,6-dehydratase OS=Shigella flexneri GN=gmd PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.345e-27 Identity = 64/173 (36.99%), Postives = 90/173 (52.02%), Query Frame = -2 Query: 190 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVGLNWKDH---------------------------VVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKVFVDVGYMAA 627 FV RKITRA+ I GL+S L+LGN + RDWG A DYV+ WMM QE P+D+V+AT + V +F+E+A +G+ + + +D RYF PAEV+ L GD TK + LGW P + ++V MV ++E K+ + GY A Sbjct: 196 FVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGYDVA 368
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GM4D_ECOLI (GDP-mannose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=gmd PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.345e-27 Identity = 64/173 (36.99%), Postives = 90/173 (52.02%), Query Frame = -2 Query: 190 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVGLNWKDH---------------------------VVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKVFVDVGYMAA 627 FV RKITRA+ I GL+S L+LGN + RDWG A DYV+ WMM QE P+D+V+AT + V +F+E+A +G+ + + +D RYF PAEV+ L GD TK + LGW P + ++V MV ++E K+ + GY A Sbjct: 196 FVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGYDVA 368 The following BLAST results are available for this feature:
BLAST of CB291299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB291299 ID=CB291299; Name=CB291299; organism=Citrus sinensis; type=EST; length=628bpback to top |