CB291301

Overview
NameCB291301
Unique NameCB291301
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB291301 vs. ExPASy Swiss-Prot
Match: YGHX_ECOLI (Putative uncharacterized protein yghX OS=Escherichia coli (strain K12) GN=yghX PE=5 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.101e-13
Identity = 48/133 (36.09%), Postives = 66/133 (49.62%), Query Frame = -3 
Query:  411 KVGVTGYCMGGALAIASSVLVPEVDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRYLS 809
            KVG+TG+C GG ++ A++V  PE+   V FYG   P  AD  + +AP+  HF ELD  +     +          A+   YE +IYPG  H F N   D   R        +D +A +LAW R   W  +YLS
Sbjct:  162 KVGITGFCYGGGVSNAAAVAYPELACAVPFYGRQAP-TADVAKIEAPLLLHFAELDTRIN----EGWPAYEAALKANNKVYEAYIYPGVNHGFHN---DSTPR--------YDKSAADLAWQRTLKWFDKYLS 278
[Close]
BLAST of CB291301 vs. ExPASy Swiss-Prot
Match: USF_AQUPY (Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.117e-11
Identity = 48/148 (32.43%), Postives = 69/148 (46.62%), Query Frame = -3 
Query:  411 SVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRYLS 842
            SV++LK       KKVGVTG+C GG L++  +   P+ +DA V FYG+P     D    K P+     E D FV   +V            +GV  +V +Y G  HAF+N          E   D +DP   + AW+   ++   YL+
Sbjct:   97 SVDFLKECRYTSPKKVGVTGFCCGGTLSMYFAGKFPDLIDASVPFYGLPQITKIDAENIKVPIFFILAEKDEFVNNDEV---IDIAKKVWKNGVDVKVKVYSGVTHAFLN----------EKREDVYDPCRAQDAWNLTVAFFKEYLT 231
The following BLAST results are available for this feature:
BLAST of CB291301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YGHX_ECOLI1.101e-1336.09Putative uncharacterized protein yghX OS=Escherich... [more]
USF_AQUPY5.117e-1132.43Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02cg04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02cg04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291301 ID=CB291301; Name=CB291301; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTTTTTTGCAGAATAGTCTCAATCTCCATCCTTTTCCAAA
TTTCTAGATAAAGTCAGCTAGTTGAGACTCCATACTTGATTGCAAATCAT
AGGACCACAAGCTATGAATCTTTTGGTCCAGAGAAGAAACCTTCTCTGCC
AAAGTTGTTTTAATCCAACCGTGTAGGTCCCCATTAACACAAGTTGTGAA
GTTCACCTTTGTGATAATCAATAAGCCTTCAGCAAACATACAATATAGGC
AAACTACAAACAGACATATCCCAGTATCGAACCCCTTTGGAAACAAAAGG
ATACTTGCAGCTGTGTTATATGTAGAGTAGAGGCATACACACGGTTATTT
ATTTAATGATGGAAGCGAGGTAAACACCATAGATTCATAATACTAGGGAA
TTACTTAAGCAGATAAGTAGCGGGTCATCCATGATTGGAAGCGAGACCAC
GCCAGCTCAACTGCGGCTGGATCGTGATCATCCATTCCCATTTCTTTCCT
CCTCTTCACTCCATCCGGAGAAATGTTCATGAAAGCATGTGCACTGCCAG
GATAAATATGTACCTCATATGGAACACCAGATGCTTTCAGCTTTTCCTCC
AATGCTTTGGCAGTTTTCACATCTGAAAAGCCAACAAAATTGTCAAGCTC
CCCAAAATGAGCTTGAACAGGTGCCTTAGCCTGGGTAGGATCGGCGAGCT
CAGGTGGGGGAACCCCATAAAATGAAACAACAGCATCAACCTCAGGAACT
AAGACAGAACTTGCAATAGCGAGAGCACCTCCCATGCAATATCCAGTCAC
GCCAACCTTCTTGGAACCATTTGCCTTAAGCCAATTAACTGAAG
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