CB291302

Overview
NameCB291302
Unique NameCB291302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 249.595 bits (636), Expect = 1.090e-65
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = -2 
Query:  293 LGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 661
            LGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Sbjct:   18 LGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140
[Close]
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.065e-65
Identity = 120/123 (97.56%), Postives = 122/123 (99.19%), Query Frame = -2 
Query:  293 LGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 661
            LGLPVAAT+NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAV+VRQRKPWRRKDGVFMYFEDNAGVIVN KGEMKGSAITGPIGKECADLWPRIASAANAIV
Sbjct:   18 LGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPRIASAANAIV 140
[Close]
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.436e-59
Identity = 112/123 (91.06%), Postives = 116/123 (94.31%), Query Frame = -2 
Query:  293 LGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 661
            LGLPV A VNCADNTGAKNLY+IS  G++GRLNRLP+A VGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEM  SAITGPIGKECADLWPRIASAANAIV
Sbjct:   18 LGLPVGAVVNCADNTGAKNLYVIS-SGVRGRLNRLPAAAVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNPSAITGPIGKECADLWPRIASAANAIV 139
[Close]
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL23_DANRE (60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.336e-55
Identity = 105/122 (86.07%), Postives = 113/122 (92.62%), Query Frame = -2 
Query:  296 LGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 661
            LGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLPSA VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.975e-55
Identity = 104/122 (85.25%), Postives = 113/122 (92.62%), Query Frame = -2 
Query:  296 LGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 661
            LGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.975e-55
Identity = 104/122 (85.25%), Postives = 113/122 (92.62%), Query Frame = -2 
Query:  296 LGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 661
            LGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.975e-55
Identity = 104/122 (85.25%), Postives = 113/122 (92.62%), Query Frame = -2 
Query:  296 LGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 661
            LGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 2.975e-55
Identity = 104/122 (85.25%), Postives = 113/122 (92.62%), Query Frame = -2 
Query:  296 LGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 661
            LGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL23_HUMAN (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.975e-55
Identity = 104/122 (85.25%), Postives = 113/122 (92.62%), Query Frame = -2 
Query:  296 LGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 661
            LGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 2.975e-55
Identity = 104/122 (85.25%), Postives = 113/122 (92.62%), Query Frame = -2 
Query:  296 LGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 661
            LGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
The following BLAST results are available for this feature:
BLAST of CB291302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 410
Match NameE-valueIdentityDescription
RL23_ARATH1.090e-6599.1960S ribosomal protein L23 OS=Arabidopsis thaliana ... [more]
RL23_TOBAC7.065e-6597.5660S ribosomal protein L23 OS=Nicotiana tabacum GN=... [more]
RL23_TORRU4.436e-5991.0660S ribosomal protein L23 OS=Tortula ruralis GN=RP... [more]
RL23_DANRE1.336e-5586.0760S ribosomal protein L23 OS=Danio rerio GN=rpl23 ... [more]
RL23_RAT2.975e-5585.2560S ribosomal protein L23 OS=Rattus norvegicus GN=... [more]
RL23_PIG2.975e-5585.2560S ribosomal protein L23 OS=Sus scrofa GN=RPL23 P... [more]
RL23_MOUSE2.975e-5585.2560S ribosomal protein L23 OS=Mus musculus GN=Rpl23... [more]
RL23_ICTPU2.975e-5585.2560S ribosomal protein L23 OS=Ictalurus punctatus G... [more]
RL23_HUMAN2.975e-5585.2560S ribosomal protein L23 OS=Homo sapiens GN=RPL23... [more]
RL23_BOVIN2.975e-5585.2560S ribosomal protein L23 OS=Bos taurus GN=RPL23 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02cg05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02cg05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291302 ID=CB291302; Name=CB291302; organism=Citrus sinensis; type=EST; length=668bp
TTTTTTTTTTTTTTAACCACCAATAGTAACCTATTTATAAAAACCTTTAA
AAAACTTTAGAACAAAATCAATATTCTCTTAAACCTTAAAATTCTTGGAA
ATTAAACACAAATTAAATTCTTCTACAATTAGAATAGGTAGAAAATCTGA
AATCTCCTTGTATCTGTCTAGCAATAGCCAATAGAGGAACAACCACAACA
CTCATCAGTAGGAAATGATCCCAATGATATTAACAGACCCTACGGTCACC
TACCAAACTAAGGCCAAAAAAATCCCTTAAAACCCCCACTCAGACAATAG
CATTGGCAGCACTTGCAATTCTTGGCCACAGATCAGCACACTCCTTACCA
ATTGGTCCAGTTATGGCAGATCCTTTCATTTCGCCCTTAGGGTTGACGAT
GACACCAGCATTATCTTCAAAGTACATGAAGACGCCGTCCTTTCGGCGCC
AGGGCTTGCGCTGGCGGACGATGACAGCTGGCATGACCTTTTTCCTCAGA
TCGGGCTTTCCTTTCTTGACAGTGGCCATGACCATGTCGCCGACGCAGGC
CGACGGAAGTCGGTTGAGTCTCCCTTTGATTCCTTTCACCGATATTATGT
AGAGATTCTTCGCACCCGTGTTGTCGGCACAGTTCACCGTCGCCGCCACC
GGCAGACCCAGCCTCGTG
back to top