CB291303

Overview
NameCB291303
Unique NameCB291303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291303 vs. ExPASy Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 1.901e-61
Identity = 115/123 (93.50%), Postives = 118/123 (95.93%), Query Frame = -2
Query:  253 LGLPVAATVNCSDNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMASVKKGKPDLRKKVMPAVIVRQRNPWRRKDGVFMYFEDNGGVIVIPKGEMKGSAITGPIGKECDDLWPRIASAANDIV 621
            LGLPVAATVNC+DNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMA+VKKGKPDLRKKV+PAVIVRQR PWRRKDGVFMYFEDN GVIV PKGEMKGSAITGPIGKEC DLWPRIASAAN IV
Sbjct:   18 LGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140          
BLAST of CB291303 vs. ExPASy Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.232e-60
Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = -2
Query:  253 LGLPVAATVNCSDNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMASVKKGKPDLRKKVMPAVIVRQRNPWRRKDGVFMYFEDNGGVIVIPKGEMKGSAITGPIGKECDDLWPRIASAANDIV 621
            LGLPVAAT+NC+DNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMA+VKKGKPDLRKKVMPAV+VRQR PWRRKDGVFMYFEDN GVIV  KGEMKGSAITGPIGKEC DLWPRIASAAN IV
Sbjct:   18 LGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPRIASAANAIV 140          
BLAST of CB291303 vs. ExPASy Swiss-Prot
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.736e-55
Identity = 105/123 (85.37%), Postives = 111/123 (90.24%), Query Frame = -2
Query:  253 LGLPVAATVNCSDNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMASVKKGKPDLRKKVMPAVIVRQRNPWRRKDGVFMYFEDNGGVIVIPKGEMKGSAITGPIGKECDDLWPRIASAANDIV 621
            LGLPV A VNC+DNTGAKNLY+IS  G++GRLNRLP+A VGDMVMA+VKKGKPDLRKKVMPAVIVRQR PWRRKDGVFMYFEDN GVIV PKGEM  SAITGPIGKEC DLWPRIASAAN IV
Sbjct:   18 LGLPVGAVVNCADNTGAKNLYVIS-SGVRGRLNRLPAAAVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNPSAITGPIGKECADLWPRIASAANAIV 139          
BLAST of CB291303 vs. ExPASy Swiss-Prot
Match: RL23_DANRE (60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.130e-52
Identity = 99/122 (81.15%), Postives = 108/122 (88.52%), Query Frame = -2
Query:  256 LGLPVAATVNCSDNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMASVKKGKPDLRKKVMPAVIVRQRNPWRRKDGVFMYFEDNGGVIVIPKGEMKGSAITGPIGKECDDLWPRIASAANDI 621
            LGLPV A +NC+DNTGAKNLYIISVKGIKGRLNRLPSA VGDMVMA+VKKGKP+LRKKV PAV++RQR  +RRKDGVF+YFEDN GVIV  KGEMKGSAITGP+ KEC DLWPRIAS A  I
Sbjct:   18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CB291303 vs. ExPASy Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.366e-51
Identity = 98/122 (80.33%), Postives = 108/122 (88.52%), Query Frame = -2
Query:  256 LGLPVAATVNCSDNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMASVKKGKPDLRKKVMPAVIVRQRNPWRRKDGVFMYFEDNGGVIVIPKGEMKGSAITGPIGKECDDLWPRIASAANDI 621
            LGLPV A +NC+DNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMA+VKKGKP+LRKKV PAV++RQR  +RRKDGVF+YFEDN GVIV  KGEMKGSAITGP+ KEC DLWPRIAS A  I
Sbjct:   18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CB291303 vs. ExPASy Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.366e-51
Identity = 98/122 (80.33%), Postives = 108/122 (88.52%), Query Frame = -2
Query:  256 LGLPVAATVNCSDNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMASVKKGKPDLRKKVMPAVIVRQRNPWRRKDGVFMYFEDNGGVIVIPKGEMKGSAITGPIGKECDDLWPRIASAANDI 621
            LGLPV A +NC+DNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMA+VKKGKP+LRKKV PAV++RQR  +RRKDGVF+YFEDN GVIV  KGEMKGSAITGP+ KEC DLWPRIAS A  I
Sbjct:   18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CB291303 vs. ExPASy Swiss-Prot
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.366e-51
Identity = 98/122 (80.33%), Postives = 108/122 (88.52%), Query Frame = -2
Query:  256 LGLPVAATVNCSDNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMASVKKGKPDLRKKVMPAVIVRQRNPWRRKDGVFMYFEDNGGVIVIPKGEMKGSAITGPIGKECDDLWPRIASAANDI 621
            LGLPV A +NC+DNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMA+VKKGKP+LRKKV PAV++RQR  +RRKDGVF+YFEDN GVIV  KGEMKGSAITGP+ KEC DLWPRIAS A  I
Sbjct:   18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CB291303 vs. ExPASy Swiss-Prot
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.366e-51
Identity = 98/122 (80.33%), Postives = 108/122 (88.52%), Query Frame = -2
Query:  256 LGLPVAATVNCSDNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMASVKKGKPDLRKKVMPAVIVRQRNPWRRKDGVFMYFEDNGGVIVIPKGEMKGSAITGPIGKECDDLWPRIASAANDI 621
            LGLPV A +NC+DNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMA+VKKGKP+LRKKV PAV++RQR  +RRKDGVF+YFEDN GVIV  KGEMKGSAITGP+ KEC DLWPRIAS A  I
Sbjct:   18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CB291303 vs. ExPASy Swiss-Prot
Match: RL23_HUMAN (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.366e-51
Identity = 98/122 (80.33%), Postives = 108/122 (88.52%), Query Frame = -2
Query:  256 LGLPVAATVNCSDNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMASVKKGKPDLRKKVMPAVIVRQRNPWRRKDGVFMYFEDNGGVIVIPKGEMKGSAITGPIGKECDDLWPRIASAANDI 621
            LGLPV A +NC+DNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMA+VKKGKP+LRKKV PAV++RQR  +RRKDGVF+YFEDN GVIV  KGEMKGSAITGP+ KEC DLWPRIAS A  I
Sbjct:   18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CB291303 vs. ExPASy Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.366e-51
Identity = 98/122 (80.33%), Postives = 108/122 (88.52%), Query Frame = -2
Query:  256 LGLPVAATVNCSDNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMASVKKGKPDLRKKVMPAVIVRQRNPWRRKDGVFMYFEDNGGVIVIPKGEMKGSAITGPIGKECDDLWPRIASAANDI 621
            LGLPV A +NC+DNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMA+VKKGKP+LRKKV PAV++RQR  +RRKDGVF+YFEDN GVIV  KGEMKGSAITGP+ KEC DLWPRIAS A  I
Sbjct:   18 LGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
The following BLAST results are available for this feature:
BLAST of CB291303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
RL23_ARATH1.901e-6193.5060S ribosomal protein L23 OS=Arabidopsis thaliana ... [more]
RL23_TOBAC1.232e-6091.8760S ribosomal protein L23 OS=Nicotiana tabacum GN=... [more]
RL23_TORRU7.736e-5585.3760S ribosomal protein L23 OS=Tortula ruralis GN=RP... [more]
RL23_DANRE6.130e-5281.1560S ribosomal protein L23 OS=Danio rerio GN=rpl23 ... [more]
RL23_RAT1.366e-5180.3360S ribosomal protein L23 OS=Rattus norvegicus GN=... [more]
RL23_PIG1.366e-5180.3360S ribosomal protein L23 OS=Sus scrofa GN=RPL23 P... [more]
RL23_MOUSE1.366e-5180.3360S ribosomal protein L23 OS=Mus musculus GN=Rpl23... [more]
RL23_ICTPU1.366e-5180.3360S ribosomal protein L23 OS=Ictalurus punctatus G... [more]
RL23_HUMAN1.366e-5180.3360S ribosomal protein L23 OS=Homo sapiens GN=RPL23... [more]
RL23_BOVIN1.366e-5180.3360S ribosomal protein L23 OS=Bos taurus GN=RPL23 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02cg05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02cg05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291303 ID=CB291303; Name=CB291303; organism=Citrus sinensis; type=EST; length=628bp
CCTTTAGTGAACACTTTAGAACAAAATCAATATTCTCTTCCAAGAACAAA
ATTCTTGGAAATTAAACACAAATTAAATTCTTCTACAATTAGAATAGGTA
GAAAATCTGAAATCTCCTTGGATCTGTCTAGCAATACCCAATAAAGGAAC
AACCACAACACTCATCAATAAGAAATGATCCCAATGATATTAACAGACCC
TACGGTCACCTACCAAACTAAGGCCAAGAAAATCCCTTAAAACCCCCACT
CAAACAATATCATTGGCAGCACTTGCAATTCTTGGCCACAAATCATCACA
CTCCTTACCAATTGGTCCAGTTATGGCAGATCCTTTCATTTCGCCCTTAG
GGATGACGATGACACCCCCATTATCTTCAAAGTACATGAAGACGCCGTCC
TTTCGGCGCCAGGGATTGCGCTGGCGGACGATGACAGCTGGCATGACCTT
TTTCCTCAGATCGGGCTTTCCTTTCTTGACAGAGGCCATGACCATGTCGC
CAACGCAGGCCGAAGGAAGTCGGTTGAGTCTCCCTTTGATTCCTTTCACC
GATATTATGTAGAGATTCTTCGCACCCGTGTTGTCGGAACAGTTCACCGT
CGCCGCCACCGGCAGACCCAGCCTCGTG
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