CB291314

Overview
NameCB291314
Unique NameCB291314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 8.259e-86
Identity = 171/230 (74.35%), Postives = 183/230 (79.57%), Query Frame = -2
Query:  155 LIFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSWFD 841
            LIFTKGDL           VGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+SPEVLDL+EDDL+ KFA+GVSMVT+L+LAISYPTLAAAPHMF+NAYKNV+AVA+ T+YSFP+ADKVKEYL DPSKF                              ESD DMGFS FD
Sbjct:   91 LIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKFAVAAVAAPAAASGAPAAAAKEEEKKEEPAEESDDDMGFSLFD 320          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 314.694 bits (805), Expect = 4.099e-85
Identity = 160/188 (85.11%), Postives = 173/188 (92.02%), Query Frame = -2
Query:  278 LIFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 841
            LIFTKGDL           VGAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFASG+SMVT+LALA+SYPTLAAAPHMFINAYKN +A+A+ATEY+FPQA+KVKEYL DPSKF
Sbjct:   90 LIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.657e-84
Identity = 158/188 (84.04%), Postives = 173/188 (92.02%), Query Frame = -2
Query:  278 LIFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 841
            LIFTKGDL           VGAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFASG+SMVT+LALA+SYPTLAAAPHMFINAYKN +A+A+AT+Y+FPQA+KVKE+L DPSKF
Sbjct:   90 LIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.657e-84
Identity = 167/228 (73.25%), Postives = 183/228 (80.26%), Query Frame = -2
Query:  158 LIFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSWF 841
            LIFTKGDL           VGAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV+SVY+NGSV++PEVL+L+EDDLVEKFA+GVSM+TAL+LAISYPT+AAAPHMF+NAYKNV+AVALATEYSFPQA+ VKE+L DP+KF                             ESDGDMGF  F
Sbjct:   91 LIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF--AVAVAAPVSGESGGAVVAVAVEEEAAEESDGDMGFDLF 316          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 311.227 bits (796), Expect = 4.532e-84
Identity = 161/229 (70.31%), Postives = 181/229 (79.04%), Query Frame = -2
Query:  155 LIFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSWFD 841
            LIFTKGDL           VGAPARVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSE+ALLAKLGIRPFSYGLV+ +VY++GSV+SPEVLDL+EDDL+EKFASGVSMV +++LAISYPT+AAAPHMF+N YKNV+AVA+ TEYS+P ADK+KEYL DPSKF                             ESDGD+G S FD
Sbjct:   91 LIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 303.908 bits (777), Expect = 7.236e-82
Identity = 153/188 (81.38%), Postives = 169/188 (89.89%), Query Frame = -2
Query:  278 LIFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 841
            LIFTKGDL           VGAPARVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KG+KVGSSE+ALLAKLGIRPFSYGL V SVYE+GSV+SPEVLDLSE+DL+EKFA+GVSMV +L+LAISYPTLAA PHMFIN YKNV+AVA+ T+YS+P ADK+KEYL DPSKF
Sbjct:   91 LIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSESALLAKLGIRPFSYGLQVTSVYEDGSVFSPEVLDLSEEDLIEKFATGVSMVASLSLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF 278          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 8.567e-75
Identity = 148/188 (78.72%), Postives = 159/188 (84.57%), Query Frame = -2
Query:  278 LIFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 841
            LIFTKG L           VGAPA VGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+ PEVLDL+EDDL+EKFA GVS       +   P  +AAPH+FINAYKNV+AVA+ATEYSFPQAD+VKEYL DPSKF
Sbjct:   91 LIFTKGYLKEVSEEVAKYKVGAPACVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFKPEVLDLTEDDLLEKFAIGVSQCYFSDTSHFIPNPSAAPHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDPSKF 278          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.377e-63
Identity = 125/152 (82.24%), Postives = 137/152 (90.13%), Query Frame = -2
Query:  386 LIFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPH 841
            LIFTKGDL           VGAPAR GLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT VELI+KG+KVGSSEAALLAKLGIRPFSYGL V+SVY++GSV+SPEVLDL+EDDL+ +FA+GVSMVT+L+LAISYPTLAAAPH
Sbjct:   91 LIFTKGDLNQVREEISKYKVGAPARFGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITAVELIKKGEKVGSSEAALLAKLGIRPFSYGLNVESVYDDGSVFSPEVLDLTEDDLLARFATGVSMVTSLSLAISYPTLAAAPH 242          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.163e-55
Identity = 108/187 (57.75%), Postives = 135/187 (72.19%), Query Frame = -2
Query:  278 IFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 838
            +FTK DL           V A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LIR GDKVG+SEA LL  L I PFSYGL++Q VY+NGSVYSPEVLD++ED L ++F  GV  + ++ L I YPTLA+ PH  IN YK V+ VA+ T+YSFP ADKVK +LADPS+F
Sbjct:   89 VFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.680e-54
Identity = 111/228 (48.68%), Postives = 144/228 (63.16%), Query Frame = -2
Query:  155 IFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSWFD 838
            +FTK DL           V A AR G +AP DV VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD++E+ L ++F  GV  V ++ L I YPT+A+ PH  +N YK V+AVA+ T+Y+FP A+KVK +LADPS F                             ESD DMGF  FD
Sbjct:   89 VFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVLAVAVETDYTFPLAEKVKAFLADPSAFVAAAPVVVETAAPAAAAAPAKEAPKEESEESDEDMGFGLFD 316          
The following BLAST results are available for this feature:
BLAST of CB291314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RLA0_SOYBN8.259e-8674.3560S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA02_ARATH4.099e-8585.1160S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA03_ARATH2.657e-8484.0460S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA01_ARATH2.657e-8473.2560S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA0_ORYSJ4.532e-8470.3160S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA0_MAIZE7.236e-8281.3860S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_LUPLU8.567e-7578.7260S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_CHERU3.377e-6382.2460S acidic ribosomal protein P0 OS=Chenopodium rub... [more]
RLA0_ICTPU1.163e-5557.7560S acidic ribosomal protein P0 OS=Ictalurus punct... [more]
RLA0_CHICK1.680e-5448.6860S acidic ribosomal protein P0 OS=Gallus gallus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02cg11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02cg11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291314 ID=CB291314; Name=CB291314; organism=Citrus sinensis; type=EST; length=842bp
TTTTTTTTTTTTTTTTTGTCCTAAATAAAGGATTATATAAAATACCAATG
AAACTGAGTCTACAAAAAGCATTAAGAAAATAAAGCCCACAAAACCAAAA
ACATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCA
CTTAGTCGAACCAGCTGAAGCCCATATCTCCATCAGACTCCTCAGCAGGG
TCTTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACC
GCCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGT
ACTCCTTCACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAGCA
ACAGCAACCACATTCTTGTATGCATTGATGAACATGTGTGGAGCAGCTGC
CAGGGTTGGGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATACAC
CTGAGGCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCT
GGGCTGTAAACAGAACCGTTTTCATAGACAGACTGGACAACAAGACCATA
AGAGAAGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATC
CCACCTTGTCACCCTTCCTGATAAGCTCCACAGGTGTGATAATTTCAACA
GTACCCTTGTTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAGGAGGT
CTGGGAGGGGTCGAGACCTGTGTTGCCGGGAGGAACAACCACATCAATTG
GAGCAACCAAACCAACACGAGCAGGAGCTCCAACCTTGTACTTAGCAACC
TCCTCTTTCACTTCCTTCAAATCACCCTTTGTGAAAATCAAC
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