CB291320

Overview
NameCB291320
Unique NameCB291320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB291320 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 71/127 (55.91%), Postives = 80/127 (62.99%), Query Frame = -2 
Query:  388 LPSLFEVVTGAAKKQVKEXXXXXXXXXXXXXXXXXVRGSESHTKYSKPMQPNXXXXXXXXXXXXXXXD---TLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 759
            LP++FEVV G AKKQ K+                  RGSES  K+SKP   +               +   T CGACGE+YA+DEFWICCD+CE WFHGKCVKITPARAEHIKQYKCPSC SNKRAR
Sbjct:  130 LPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSK-RGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSC-SNKRAR 254
The following BLAST results are available for this feature:
BLAST of CB291320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH1.732e-3155.91PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02ch02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ch02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291320 ID=CB291320; Name=CB291320; organism=Citrus sinensis; type=EST; length=766bp
TTTTTTTTTTTTTTTTTGATGTAACTAGTACTGTTAACATCTCTTCCCAA
ATACCGCATTTAAGGATTTTGAGAGGACCCAGAAGTAGAAACTAATGACG
AGGTTCCAAAATTTCAGCCCCTGATAAAGAACGACGGTCCCTAAGTTGGA
CCAATGCCAGTTCTCTAACTGAAAACAGTAATTATTTTTCACAGGAAAAA
TTCATTAAACTACAAATTAACAGTACTATTACTGAAATATGAGATCTTTC
CTAAACCGAATTATCCATTCACAAGCATAACTACAATAACAACTGGGAAA
AGAAACTGATCAATGGGCAGGCAGTTGGCGGCGTCAACAATGAGGAAAGT
ACAGAAGAGACTACATCATTTCATCGTTCGGTTAAGGGCGGGCTCTCTTG
TTGCTGCTGCAAGAAGGGCACTTGTATTGCTTGATATGTTCAGCCCTGGC
TGGAGTGATCTTCACACACTTCCCATGGAACCACTTCTCGCAGATGTCAC
AACAAATCCAGAATTCATCCGAAGCATAGTTCTCACCACAAGCCCCGCAT
AAAGTGTCACCATGCTCATCTTCTTCTTCCTCGTCCATGCCCTCATCTTC
ATCGTTTGGTTGCATTGGCTTAGAATACTTTGTATGAGATTCGGATCCTC
GCACTTTGGAGTGTGACTTGGATTTGTTGCTACTATGATTTGAGACTGAT
GACTTCTCCTTAACTTGTTTCTTAGCTGCACCAGTTACAACTTCAAATAA
CGATGGAAGCCTCGTG
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